Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 3e-14 seq15 82.4 5e-11 >seq6 Length=3640113 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||| || |||||| || ||||| || || || || || || Sbjct 612385 AGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGA 612444 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || ||||| ||||| || || || || ||||| ||||| || || | || ||| Sbjct 612445 CCGTCCTCGAGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGGAGGAATACCTTCC 612504 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||||| | |||||| | || ||||| ||| || || | || Sbjct 612505 TTGTCCTGGATCTTC-GACTTAACGTTGTCGATAGTGTCGGAAGACTCGACCTCAAGAGT 612563 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGATTGT 34715 || || || ||||| | || || || ||||||||||| ||| |||| Sbjct 612564 GATGGTCTTGCCGGTAAGGGTCTTAACGAAAATCTGCATCTTGGTTGT 612611 >seq15 Length=310649 Score = 82.4 bits (90), Expect = 5e-11 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 || || ||| |||||| || ||||| || || ||||| || || |||| || || || Sbjct 111202 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCGAGCTGC 111143 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||| ||||| || || | ||| |||||||| ||||| Sbjct 111142 TTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGAATCTTG 111083 Query 34624 TGTTTTAACGATAAAATTGTGTCTTCGCT---CTCCACTTCCACGGTTATCGTTTTACCG 34680 | ||| || || || || | |||| |||||| || | ||| || || || || Sbjct 111082 -GATTTGACATTATCGATG-GTAT-CGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCC 111026 Query 34681 GTTAACGTTTTCACAAAAATCTGCATG 34707 || | || || || |||||||||||| Sbjct 111025 GTAAGGGTCTTTACGAAAATCTGCATG 110999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729534791961