Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq6 113 4e-20 >seq6 Length=3640113 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || ||| | |||||||| || || ||| | ||| Sbjct 612067 ATGCAGATCTTCGTCAAGACCTTGACGGGTAAGACGATTACTCTCGAGGTCGAATCTTCC 612008 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | ||||| || ||||||||||| || || || ||||| || || Sbjct 612007 GATACTATCGACAACGTCAAGTCGAAGATTCAAGACAAGGAGGGTATCCCACCTGACCAG 611948 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || ||| | || | ||| || || || |||||||| | ||| | || ||||| || || Sbjct 611947 CAACGTCTCATCTTCGCTGGAAAGCAGTTGGAAGA-TGGACGAACTTTGTCCGACTATAA 611889 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || || || ||| | || ||||| | ||| | || ||||| || Sbjct 611888 CATTCAGAAAGAATCCACCCTTCACTTGGTCCTCCGTCTCCGTGGTGGTAT 611838 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || || ||||| ||| | || || || || |||||| | || Sbjct 611839 ATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACCATCACACTCGAGGTGGAATCTTCG 611780 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || || || || ||||| || || || || || || || Sbjct 611779 GATACCATTGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCAG 611720 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC-CGATTACAA 27166 || ||| | || | |||||| || || ||||| || | ||| | || ||| ||||| Sbjct 611719 CAACGTCTTATCTTCGCCGGTAAGCAGTTGGAGGATGGC-CGAACTTTGAGCGACTACAA 611661 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || ||||||||||| | || |||||| | ||| | || |||||| Sbjct 611660 CATCCAGAAGGAGTCGACTCTTCACTTGGTTCTTCGTCTCCGTGGTGGC 611612 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || || || ||||||||| | || || ||||| || || | |||||| | ||||| Sbjct 612283 GTCAAGACCCTTACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCCGACACCATTGAC 612224 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 | ||||| || || || || || || ||||| || ||||| || ||||| || || Sbjct 612223 AACGTCAAGTCGAAGATCCAGGATAAGGAGGGCATCCCTCCCGACCAGCAGCGATTGATC 612164 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | || || || || | || || | ||| |||| || ||||||||||| |||||| Sbjct 612163 TTTGCTGGTAAGCAGCTCGAGGATGGCCGTACCCTTTCGGACTACAACATTCAGAAGGAG 612104 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || | || | || | ||| | || ||||| || Sbjct 612103 TCCACTCTCCACCTTGTCCTTCGTCTTCGTGGTGGTAT 612066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918307579840