Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1 167 2e-36 >seq1 Length=7732581 Score = 167 bits (184), Expect = 2e-36 Identities = 280/400 (70%), Gaps = 8/400 (2%) Strand=Plus/Plus Query 34229 CTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAGG 34288 ||||||||||| || || | | |||| ||| || | |||||| || ||||||||| | Sbjct 2738423 CTGACGACGAAGCGGGTCTTCCTCAAGGCCGTCGTAGCGGAGCTTCTATGGTTCGTGGAG 2738482 Query 34289 GGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGG 34348 ||| |||| | || ||| ||| ||||| ||||| ||||||| ||||| Sbjct 2738483 GGGAACACGTCGTCGCTGGCGCTATCGGAGGCCGGGGTCAAGATATGGGACGGGAACGGG 2738542 Query 34349 TCTCGAGACTTTCTGGACAAGCGGGGGT---TCCCATCTCGGGAGGAGGGCGACTTGGGC 34405 || || || || || |||| ||| ||| || |||| || ||| ||||||| |||| Sbjct 2738543 TCGCGCGAGTTCCTCGACA-GCGTGGGACTGTCGCATCGCG--AGGTGGGCGACCTGGGG 2738599 Query 34406 CCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAG-CGGA 34464 ||||| ||||||||||||||| ||||||| ||||| ||||| || || |||||| |||| Sbjct 2738600 CCGGTGTACGGGTTCCAGTGGCGACACTTCGGGGCCGAGTA-CGTGGACGCGAAGACGGA 2738658 Query 34465 CTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCC 34524 || |||| ||||| | || |||||| | |||||| ||| | | || ||||| Sbjct 2738659 TTACGCGGGTCAGGGCGTCGATCAGCTGGCCGAGGTGATCCACAAGCTCAGGCATAACCC 2738718 Query 34525 TGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCT 34584 | || || | ||| | | |||| ||||||||| ||| || ||||||||| Sbjct 2738719 GTACGATCGACGCATCATCCTCAGCGCCTGGAACCCGGCCGATATCAAGAAGATGGCGCT 2738778 Query 34585 CCCCCCGTGCCACACCCTCTGCCAATTCTACGTNNCGAAT 34624 || || || |||| || ||||||||||| || || Sbjct 2738779 TCCGCCTTGTCACATGTTCGCGCAATTCTACGTTTCGTAT 2738818 Score = 167 bits (184), Expect = 2e-36 Identities = 280/400 (70%), Gaps = 8/400 (2%) Strand=Plus/Minus Query 6721 ATTCGNNACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || || ||||||||||| || |||| || || || ||||||||| || ||| Sbjct 2738818 ATACGAAACGTAGAATTGCGCGAACATGTGACAAGGCGGAAGCGCCATCTTCTTGATATC 2738759 Query 6781 CTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTC 6840 ||||||||| |||| | | ||| | || || | ||||| || | | ||| Sbjct 2738758 GGCCGGGTTCCAGGCGCTGAGGATGATGCGTCGATCGTACGGGTTATGCCTGAGCTTGTG 2738699 Query 6841 GATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTCGCTCCCCCGAT 6899 |||||| | |||||| || | ||||| |||| || |||| |||||| || || | Sbjct 2738698 GATCACCTCGGCCAGCTGATCGACGCCCTGACCCGCGTAATCCGTCTTCGCGTCCACG-T 2738640 Query 6900 ACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCC 6959 |||| ||||| ||||||| ||||||||||||||| ||||| |||| ||||||| ||| | Sbjct 2738639 ACTCGGCCCCGAAGTGTCGCCACTGGAACCCGTACACCGGCCCCAGGTCGCCCACCT--C 2738582 Query 6960 GAGATGGGA---ACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCT 7016 | |||| || ||| ||| |||| || || || || ||||||| ||||||| |||| Sbjct 2738581 GCGATGCGACAGTCCCACGC-TGTCGAGGAACTCGCGCGACCCGTTCCCGTCCCATATCT 2738523 Query 7017 TCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCT 7076 | ||||| ||| ||| || | |||| |||| ||||||||| || |||| Sbjct 2738522 TGACCCCGGCCTCCGATAGCGCCAGCGACGACGTGTTCCCCTCCACGAACCATAGAAGCT 2738463 Query 7077 CCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAG 7116 || | || ||| |||| | | || || ||||||||||| Sbjct 2738462 CCGCTACGACGGCCTTGAGGAAGACCCGCTTCGTCGTCAG 2738423 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 34620 CGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGC 34679 |||| || | ||| ||| ||||| || || || || | |||||||| | || |||| Sbjct 2738889 CGAAGGGACATCTGCACTGTCAGCTATACCAGCGCTCCTGCGACATGGGCCTGGGCGTGC 2738948 Query 34680 CGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTG-GGGTTG 34738 |||||||||| || || ||||| || || ||| |||||||||| || || ||| | | | Sbjct 2738949 CGTTCAACATCGCCAGCTACGCGCTCCTGACGCACATGATCGCGCACGT-GTGCGAGCTC 2739007 Query 34739 GTTCCTGGGGAGCTGGTGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCG 34796 || || ||| ||| || |||| |||| || ||||| | ||| ||||| ||| Sbjct 2739008 GTGCCCGGGAGCCTGACGC--ACGTCATGGGCGACGCGCACGTGTACTGCGACCACGTCG 2739065 Query 34797 AGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCC 34839 | ||||||| | ||||| | || |||||| | ||||||| Sbjct 2739066 ATGCGCTCCGGGTGCAGCTCGAGCGCGAGCCCAGGGCGTTCCC 2739108 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 6506 GGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAG 6565 ||||||| | |||||| || | ||||| | ||||||| |||| ||||| ||| Sbjct 2739108 GGGAACGCCCTGGGCTCGCGCTCGAGCTGCACCCGGAGCGCATCGACGTGGTCGCAGTAC 2739049 Query 6566 ATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACCC-CACGACATGA 6622 | ||||| || |||| |||| || ||| ||| || || | | | ||| || || Sbjct 2739048 ACGTGCGCGTCGCCCATGACGT--GCGTCAGGCTCCCGGGCACGAGCTCGCAC-ACGTGC 2738992 Query 6623 GCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATG 6682 |||||||||| ||| || || ||||| || || |||||||||||||| || | |||||| Sbjct 2738991 GCGATCATGTGCGTCAGGAGCGCGTAGCTGGCGATGTTGAACGGCACGCCCAGGCCCATG 2738932 Query 6683 TCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCG 6725 || | || || || || ||||| ||| ||| | || |||| Sbjct 2738931 TCGCAGGAGCGCTGGTATAGCTGACAGTGCAGATGTCCCTTCG 2738889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262304744240