Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq15 181 2e-40 seq6 170 4e-37 seq3 143 6e-29 >seq15 Length=310649 Score = 181 bits (200), Expect = 2e-40 Identities = 176/225 (78%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| |||||||| |||||||| || |||||||| || || | ||| || Sbjct 111221 ACGAAGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGT 111162 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| |||||||| || || || ||||| ||||||| ||| Sbjct 111161 ACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCC 111102 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC---AGAGCTTTCAACCTC 211069 |||||||||||| ||||| ||| || || |||||||| || ||| || ||||| Sbjct 111101 TTCCTTGTCCTGAATCTTGGATTTGACATTATCGATGGTATCGCTAGA---CTCCACCTC 111045 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| ||||| || |||||||| || | |||||| Sbjct 111044 GAGGGTGATAGTCTTGCCCGTAAGGGTCTTTACGAAAATCTGCAT 111000 >seq6 Length=3640113 Score = 170 bits (188), Expect = 4e-37 Identities = 167/213 (78%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATC 210961 || || | ||||||||| ||||| || |||||||| || || | ||| | || ||||| Sbjct 611628 AGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTTCGG-CCATC 611686 Query 210962 TTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||| |||||| || ||||||||||| ||||| |||||||| || | || |||||||| Sbjct 611687 CTCCAACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCAGGCGGGATACCCTCCTTGTC 611746 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||||||| |||||||| || ||||| || || ||| |||||||| ||||| || Sbjct 611747 CTGGATCTTGCTCTTCACGTTGTCAATGGTATCCGAAGATTCCACCTCGAGTGTGATGGT 611806 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||| ||||| ||||| ||||| | ||||| Sbjct 611807 CTTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 611839 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | |||||| ||||| ||||| || |||||||| || | | || | ||||||| Sbjct 611856 AGGACCAAGTGAAGGGTGGATTCTTTCTGAATGTTATAGTCGGACAAAGTTCGTCCATCT 611915 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || |||||||| || ||||| |||||||| || | || |||||||| Sbjct 611916 TCCAACTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCAGGTGGGATACCCTCCTTGTCT 611975 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||| || || || ||| ||||||||||| |||||| Sbjct 611976 TGAATCTTCGACTTGACGTTGTCGATAGTATCGGAAGATTCGACCTCGAGAGTAATCGTC 612035 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| | ||||| || || | |||||| Sbjct 612036 TTACCCGTCAAGGTCTTGACGAAGATCTGCAT 612067 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||||||||| ||||||||||| || || ||||| || |||| |||||| Sbjct 612074 ACGAAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGGGT 612133 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || |||||||| || || ||||| | || || ||||| ||||| | || Sbjct 612134 ACGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGGATGCC 612193 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| ||||||||||| || ||||| || |||||||| || || ||||| || Sbjct 612194 CTCCTTATCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAG 612253 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||||| ||||| || || || ||||| || Sbjct 612254 GGTGATGGTCTTGCCGGTAAGGGTCTTGAC 612283 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| || || ||||| || |||||||| || || | || || | || || Sbjct 612391 AGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCC 612450 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || ||||| || | || || ||||||||||||| |||||||||||| Sbjct 612451 TCGAGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCC 612510 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| ||||| ||||| || || ||||| |||||||| ||| Sbjct 612511 TGGATCTTCGACTTAACGTTGTCGATAGTGTCGGAAGACTCGACCTCAAGAGTGATGGTC 612570 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| || || | |||||| || Sbjct 612571 TTGCCGGTAAGGGTCTTAACGAAAATCTGCATCTT 612605 >seq3 Length=5105224 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | ||||||| ||||| || |||||||| || |||||||| Sbjct 833602 TTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 833543 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || || |||||||| |||| ||||||||||||||| ||||| || || || || Sbjct 833542 AGACGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCA 833483 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| || || |||||||| ||||| ||||| ||||| || ||||| || || Sbjct 833482 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAA 833424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151747522205