Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6 107 1e-18 seq15 102 6e-17 >seq6 Length=3640113 Score = 107 bits (118), Expect = 1e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||||||||| ||||| || || || || |||||||| || || || || Sbjct 612605 AAGATGCAGATTTTCGTTAAGACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCT 612546 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | |||||| | || || |||| | || || ||||| |||||| | || || || Sbjct 612545 TCCGACACTATCGACAACGTTAAGTC-GAAGATCCAGGACAAGGAAGGTATTCCTCCTGA 612487 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || ||||| || || || || || || ||||| || |||| |||||| | ||| || Sbjct 612486 CCAGCAGCGATTGATTTTCGCTGGTAAGCAACTCGAGGACGGTCGCACTCTCTCCGACTA 612427 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 612426 CAACATCCAGAAGGAGTCTAC 612406 >seq15 Length=310649 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| ||||| || || ||||| ||||| || || || | Sbjct 111000 ATGCAGATTTTCGTAAAGACCCTTACGGGCAAGACTATCACCCTCGAGGTGGAGTCTAGC 111059 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | ||| | || ||| ||||| ||||| | || || || || Sbjct 111060 GATACCATCGATAATGTCAAATC-CAAGATTCAGGACAAGGAAGGAATTCCTCCCGACCA 111118 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || || || |||| || ||| | || ||||| Sbjct 111119 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTTTCTGACTACAA 111178 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 111179 CATCCAGAAGGAGTCCAC 111196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338009529968636