Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq15 123 6e-23 seq6 102 2e-16 seq3 98.7 2e-15 >seq15 Length=310649 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || ||||| || ||||| || ||||||||||| || | | ||| | || || Sbjct 111212 GAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTC 111153 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| || | ||||||||| | | ||||||||||| || Sbjct 111152 CTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTC 111093 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 ||||| || ||||||| | || | | | || | ||| || || || || ||||| Sbjct 111092 CTGAATCTTGGATTTGACATTATCGATGGTATCGCTAGACTCCACCTCGAGGGTGATAGT 111033 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || ||||| ||||| | |||||| Sbjct 111032 CTTGCCCGTAAGGGTCTTTACGAAAATCTGCAT 111000 >seq6 Length=3640113 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||| ||||| || ||||||||||| ||| ||||||| ||||| || | Sbjct 611633 CAAG-TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCCTCCA 611691 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || |||||||||||||| | |||||||| | || ||| || ||||| || || | Sbjct 611692 ACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGA 611751 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | | | || ||| || || || || || || || || | Sbjct 611752 TCTTGCTCTTCACGTTGTCAATGGTATCCGAAGATTCCACCTCGAGTGTGATGGTCTTTC 611811 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| || |||| ||||| Sbjct 611812 CGGTGAGGGTCTTGACAAAGATTTGCAT 611839 Score = 98.7 bits (108), Expect = 2e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || || |||||||| || ||||||||||| |||| | ||| | Sbjct 612384 GAGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCG 612443 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || || ||||| || | | ||||||||| | | || ||||| Sbjct 612444 ACCGTCCTCGAGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGGAGGAATACCTTC 612503 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || || || | || | |||| ||| ||| || |||||||| Sbjct 612504 CTTGTCCTGGATCTTCGACTTAACGTTGTCGATAGTGTCGGAAGACTCGACCTCAAGAGT 612563 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| || || ||||| ||||| | |||||| || Sbjct 612564 GATGGTCTTGCCGGTAAGGGTCTTAACGAAAATCTGCATCTT 612605 >seq3 Length=5105224 Score = 98.7 bits (108), Expect = 2e-15 Identities = 132/182 (73%), Gaps = 4/182 (2%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGGCGAAGA 151974 || ||||||||||| || | | || | ||||| || || ||||| || ||||||| Sbjct 833602 TTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCCTCGAGCTGCTTT--CCAGCGAAGA 833545 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | || | ||||||||| | | ||||||||||| || ||||| || |||||| | | Sbjct 833544 TCAGACGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGT 833485 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | | |||| ||| ||| || || || || || || |||||||| || ||||| |||| Sbjct 833484 CAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGA 833425 Query 152095 AG 152096 || Sbjct 833424 AG 833423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820548683407