Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq15 131 1e-25 seq6 129 4e-25 seq3 111 1e-19 >seq15 Length=310649 Score = 131 bits (144), Expect = 1e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| ||| |||||| ||||||||||| || | || || |||| || Sbjct 111208 ACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCG 111149 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||| ||||||| ||||||||| || | ||| | |||||||| ||| Sbjct 111148 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGA 111089 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| || | | | ||||| ||| || |||||||| | || || ||||| Sbjct 111088 ATCTTGGATTTGACATTATCGATGGTATCGCTAGACTCCACCTCGAGGGTGATAGTCTTG 111029 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 ||||| |||||||| ||||| || |||||||| Sbjct 111028 CCCGTAAGGGTCTTTACGAAAATCTGCATGAT 110997 >seq6 Length=3640113 Score = 129 bits (142), Expect = 4e-25 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||| || || |||||| ||||||||||| |||| ||| ||| |||| || Sbjct 612394 ACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCG 612453 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| || || || ||||| |||||||| || | ||| | ||||||||| ||| Sbjct 612454 AGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGG 612513 Query 44249 ATCTTCTGCTTCAATGTT-CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 |||||| ||| || ||| | || ||||||| || || ||||| | || || ||||| Sbjct 612514 ATCTTCGACTT-AACGTTGTCGATAGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTT 612572 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||| ||||| || ||||| Sbjct 612573 GCCGGTAAGGGTCTTAACGAAAATCTGCAT 612602 Score = 123 bits (136), Expect = 2e-23 Identities = 156/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGCGCTCGTCGT 44186 |||| |||||| || |||||| ||||||||||| ||| | ||| | || | || | Sbjct 611631 ACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTTCG-GC-CATCCT 611688 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||| |||||| ||||| ||||| | ||| ||||| || | || | ||| ||||| ||| Sbjct 611689 CCAACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCAGGCGGGATACCCTCCTTGTCCT 611748 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| ||||| | | ||||| || | ||||||||||| | || || |||| Sbjct 611749 GGATCTTGCTCTTCACGTTGTCAATGGTATCCGAAGATTCCACCTCGAGTGTGATGGTCT 611808 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| ||||||||||| || ||||||||||| Sbjct 611809 TTCCGGTGAGGGTCTTGACAAAGATTTGCAT 611839 Score = 107 bits (118), Expect = 1e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| |||||| || |||||||| || | || || | || || Sbjct 612087 ACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCG 612146 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || ||||||||||| |||||||| || | ||| | || ||||| ||| Sbjct 612147 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGG 612206 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | | | |||||||||| || || ||||| | || || ||||| Sbjct 612207 ATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTCTTG 612266 Query 44309 CCCGTGAGGGTCTTCACGA 44327 || || |||||||| |||| Sbjct 612267 CCGGTAAGGGTCTTGACGA 612285 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGA--GTTGGCGCTCGTCGT 44186 |||| |||||| ||| || || || ||||| || |||| | ||| || | || | Sbjct 611859 ACCAAGTGAAGGGTGGATTCTTTCTGAATGTTATAGTCGGACAAAGTT--CGTCCATCTT 611916 Query 44187 CCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCG 44246 ||| |||||| || || ||||| | ||| ||||| || | || | ||| ||||| || Sbjct 611917 CCAACTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCAGGTGGGATACCCTCCTTGTCTT 611976 Query 44247 TTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| | | | || || |||| ||||| ||||| | |||||||||| Sbjct 611977 GAATCTTCGACTTGACGTTGTCGATAGTATCGGAAGATTCGACCTCGAGAGTAATCGTCT 612036 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | |||||| |||||||| ||||| Sbjct 612037 TACCCGTCAAGGTCTTGACGAAGATCTGCAT 612067 >seq3 Length=5105224 Score = 111 bits (122), Expect = 1e-19 Identities = 136/184 (74%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| || | ||| || | || || |||||||| || || |||| Sbjct 833604 CCTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGA 833545 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGT 44265 ||| ||||||||| || | || | |||||||| ||| ||||| ||| || ||| Sbjct 833544 TCAGACGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGT 833485 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | |||||||||| || |||||||| | || || ||||| ||||| |||||||| || Sbjct 833484 --CAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAAC 833427 Query 44326 GAAG 44329 |||| Sbjct 833426 GAAG 833423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990325414489