Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq15 158 3e-33 seq6 145 2e-29 seq3 143 6e-29 seq11 84.2 5e-11 >seq15 Length=310649 Score = 158 bits (174), Expect = 3e-33 Identities = 161/209 (77%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA---AAGCTCA 177980 || |||||||| || || || || || || || ||||||||||||||||| ||| Sbjct 111003 CAGATTTTCGTAAAGACCCTTACGGGCAAGACTATCACCCTCGAGGTGGAGTCTAGC--- 111059 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 || |||||||| || |||||| |||||||||||||| |||||||| ||||| |||||| Sbjct 111060 GATACCATCGATAATGTCAAATCCAAGATTCAGGACAAGGAAGGAATTCCTCCCGACCAG 111119 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || ||||||||||| || |||||||| || || | |||||| | || || ||| Sbjct 111120 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTTTCTGACTACAAC 111179 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 111180 ATCCAGAAGGAGTCCACCCTTCACCTCGT 111208 >seq6 Length=3640113 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || ||||| || |||||||| ||| || || Sbjct 612064 CAGATCTTCGTCAAGACCTTGACGGGTAAGACGATTACTCTCGAGGTCGAATCTTCCGAT 612005 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| |||||||| ||||| || || ||||| || ||||||||| Sbjct 612004 ACTATCGACAACGTCAAGTCGAAGATTCAAGACAAGGAGGGTATCCCACCTGACCAGCAA 611945 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| ||| | ||||||||| | ||| | |||| |||||| | Sbjct 611944 CGTCTCATCTTCGCTGGAAAGCAGTTGGAAGATGGACGAACTTTGTCCGACTATAACATT 611885 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || |||||||| || || || |||| Sbjct 611884 CAGAAAGAATCCACCCTTCA-CTTG 611861 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || ||||| ||||| || ||||| |||||||||||| || || Sbjct 611836 CAAATCTTTGTCAAGACCCTCACCGGAAAGACCATCACACTCGAGGTGGAATCTTCGGAT 611777 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || ||||| |||||||| || || ||||| || ||||||||| Sbjct 611776 ACCATTGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCAGCAA 611717 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || ||| | || ||||| | ||| | ||| || ||| || Sbjct 611716 CGTCTTATCTTCGCCGGTAAGCAGTTGGAGGATGGCCGAACTTTGAGCGACTACAACATC 611657 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || || || || || |||| || Sbjct 611656 CAGAAGGAGTCGACTCTTCA-CTTGGTT 611630 >seq3 Length=5105224 Score = 143 bits (158), Expect = 6e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || || || || || || ||||||||||||||||| || |||||||| Sbjct 833424 TTCGTTAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCATT 833483 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| |||||||||||||| |||||||| || || |||||||| || || Sbjct 833484 GACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCAGCAGCGTCTG 833543 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| ||||| |||||||| ||||| |||| || | || || ||| |||| || Sbjct 833544 ATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGGACCCTCTCTGACTACAACATCCAGAA 833602 >seq11 Length=1431289 Score = 84.2 bits (92), Expect = 5e-11 Identities = 179/266 (67%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 214128 GTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATTCCCAC 214187 ||| ||||||||||| |||||| | ||| ||||| ||||| || | || Sbjct 452240 GTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAAAGCATGAATGGGTTACCAGT 452181 Query 214188 CTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTTGG- 214246 ||| ||||| | || ||| || ||| |||| |||||||| |||||| | | Sbjct 452180 CTCAGTCTGAGCCTCGAGGATGGCATACCAAAGTTTCTGGGCCTT---GACCTTCTGGCG 452124 Query 214247 --CTCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATC 214304 | | |||||| ||||||||| || || |||| ||| || || |||||||| || Sbjct 452123 GCCACGGCCCTCGGCTTCGTACTTCTCGTACAGAGCCTCGAACTCATCGCCGTAGACGTC 452064 Query 214305 ATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCT 214364 | | || || || ||||||||| || | || |||||| || || | | || | Sbjct 452063 AGCGAGGCCAGGGCACTCGTTGGGACACATGAGCGTCCATTCACCGTTCTTCTCAACACG 452004 Query 214365 TTTCATGAAAAGGTCGGAAGTCCAGA 214390 ||||||||||| |||| | |||||| Sbjct 452003 CTTCATGAAAAGATCGGGAATCCAGA 451978 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730937812298