Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq9 107 4e-18 >seq9 Length=1292822 Score = 107 bits (118), Expect = 4e-18 Identities = 277/416 (67%), Gaps = 6/416 (1%) Strand=Plus/Plus Query 230240 TCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCA 230299 |||||||||| ||| || ||||||| || ||| | || || ||| | ||| Sbjct 486950 TCTTTTGGCTCAAGAAGCGTGGCCTGATGCCAGGTCTCACCTTCTCGAATGAGCTGATCT 487009 Query 230300 GTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAAAGCTCCAGAACA 230359 ||| ||||||||||| ||| | | || | | || ||| || | || | ||| Sbjct 487010 CTCGTGACGAGGGTCTGCATACAGATTTTGCCTGCCTCTTGTTCTCCCACCTAAACCACA 487069 Query 230360 AGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGT 230419 | | || || |||| || | ||||| || || ||||| | | ||| | |||| Sbjct 487070 GACCATCAAAGCAGGCGGTAGAAGACATCATAACCGAGGCAGTCGTGATCGAGCAAGAGT 487129 Query 230420 TCATTTGTGACGCTATTCCATGTCGCCTTATT-GGCATGAACGCTGAACTT-ATGGGACA 230477 | | ||| ||| | || || ||| || | ||||||||| | || ||| ||| || Sbjct 487130 TTCTCACTGATGCTCTGCCGTG-CGCATTGCTCGGCATGAACTC-GACCTTGATGAAGCA 487187 Query 230478 GTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAA 230537 ||||| ||||| || || || || | ||||||| ||||| || | || | ||||| Sbjct 487188 ATACATTGAATTTGTTGCTGATCGTCTACTTGTTGCTCTTGGCAACAACAAGTTTTACAA 487247 Query 230538 CTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTT 230597 || ||| ||||| | || ||||| || || ||| || || ||||||||||| Sbjct 487248 TGTTACGAATCCCTTCGACTTCATGGACAATATCTCTCTTGCTGGCAAAACCAACTTCTT 487307 Query 230598 CGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG--AAGCCCGAAGACAA 230651 ||| ||||| || |||||||||| | | ||||||| ||| |||| | |||| || Sbjct 487308 CGAGAAGCGCGTGGGTGACTATCAAAAGGCTGGTGTCATGGCAAGCACCAAGAAAA 487363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823457865200