Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq9 214 2e-50 >seq9 Length=1292822 Score = 214 bits (236), Expect = 2e-50 Identities = 562/848 (66%), Gaps = 11/848 (1%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || | ||||| || ||||| ||||| |||||||| | ||||| ||||| | Sbjct 487333 TTTGATAGTCACCCACGCGCTTCTCGAAGAAGTTGGTTTTGCCAGCAAGAGAGATATTGT 487274 Query 16734 CCATGAAATCAAAAGGATTAGTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGAT 16791 ||||||| || || ||||| ||| | || ||| || | | | || || | | | Sbjct 487273 CCATGAAGTCGAAGGGATTCGTAACATTGTAAAACTTGTTG--TTGCCAAGAGCAACAAG 487216 Query 16792 TAATCTATCCGCTACAAATTCTATATATTGGCACATTAAT-TCGCAGTTCATTCCTAT-A 16849 || | ||| || |||||||| || ||||| ||| || ||| ||||||| || | | Sbjct 487215 TAGACGATCAGCAACAAATTCAATGTATTGCTTCATCAAGGTCG-AGTTCATGCCGAGCA 487157 Query 16850 AGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATA 16909 | || || || ||||| || || | ||| |||||| || || || || || | || Sbjct 487156 ATGCGCAC-GGCAGAGCATCAGTGAGAAACTCTTGCTCGATCACGACTGCCTCGGTTATG 487098 Query 16910 ATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCG 16969 || | || | || || ||| | || || || || |||| || || || Sbjct 487097 ATGTCTTCTACCGCCTGCTTTGATGGTCTGTGGTTTAGGTGGGAGAACAAGAGGCAGGCA 487038 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 ||||| ||| | |||||||| | ||| || || || || || || | || ||| Sbjct 487037 AAATCTGTATGCAGACCCTCGTCACGAGAGATCAGCTCATTCGAGAAGGTGAGACCTGGC 486978 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 ||| || || ||||| | |||||| | | ||||| || ||||||||||| || ||| Sbjct 486977 ATCAGGCCACGCTTCTTGAGCCAAAAGACAGATGCGAAGGAGCCAGAAAAGAAGATTCCC 486918 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCAT 17149 ||||||| ||| || || | | |||| || | |||| || |||| ||||||| Sbjct 486917 TCGACGGCTGCGAAGGCAACAAGGCGTTGAGCAAAAGTCGACTCCTTGTCCGAAATCCAT 486858 Query 17150 TTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAAT 17209 | |||| | |||||||| |||||| || || || ||||| | || | Sbjct 486857 CGAAGAGCCCAGTTGGCTTTTTTTCGGATGCAAGGAATGGTGTCAATGGCGTCGAACAGG 486798 Query 17210 TTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAG 17269 | | | ||| | | | || | || ||||| || || | | |||||||| || ||| Sbjct 486797 TATTGTCTTTGTTTTGGCTCCTTGATGTACGTGTCAATCAACAAACTGTACATCTCCGAG 486738 Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACT 17329 || ||||||||||| || ||||| || || ||||| || || || | |||||| ||| Sbjct 486737 TGAATGTTCTCCATCATGATTTGAAAGCCATAGAAGCACCGAGCCTCGGGTATTTGGACT 486678 Query 17330 TCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAAC 17389 || | | |||||||| | |||||||| || || ||||| || || || || || || Sbjct 486677 TCGCCTGAAAATCGTTCGACGAGATTTTCATTGACAATGCCATCACTGGCAGCAAAGAAG 486618 Query 17390 GCCAATATATGCTTAATGAAATATTTTTCGTC--CG-GTGTAAGAACGCGCCAGTCCTTT 17446 || | | || | ||| ||| ||||||| || | | | | | |||||| | | Sbjct 486617 GCAAGGACGTGGGAGACGAAGTATCTTTCGTCATCGTTTAGACGTTCACTCCAGTCATGT 486558 Query 17447 AAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATAC 17506 |||||| || | || |||||||| | ||||| ||| ||| | || || |||||| Sbjct 486557 TGATCTTTTGACAGGTCGACTTCTTCTGCTGTCCAGAAAGAAGCTTCGGCTTTCTTATAC 486498 Query 17507 ATATTCCA 17514 || | ||| Sbjct 486497 ATCTGCCA 486490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545341227200