Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq9 233 2e-56 >seq9 Length=1292822 Score = 233 bits (258), Expect = 2e-56 Identities = 570/851 (67%), Gaps = 17/851 (2%) Strand=Plus/Minus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 |||| || |||| ||||| || ||||||||||| ||||| || | | ||| ||||| | Sbjct 487333 TTTGATAGTCACCCACGCGCTTCTCGAAGAAGTTGGTTTTGCCAGCAAGAGAGATATTGT 487274 Query 15972 CCATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAAC 16029 |||| || || |||||||| ||| | || ||| ||| || || || | || Sbjct 487273 CCATGAAGTCGAAGGGATTCGTAACATTGTAAAA--CTTGTTGTTGCCAAGAGCAACAAG 487216 Query 16030 TAATCTATCTGCTACAAATTCTATATATTGACACATTAAG-TCGCAATTAATTCCTATAA 16088 || | ||| || |||||||| || ||||| ||| ||| ||| | || || || | | Sbjct 487215 TAGACGATCAGCAACAAATTCAATGTATTGCTTCATCAAGGTCG-AGTTCATGCCGAGCA 487157 Query 16089 GT-CGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATG 16147 | || || || ||||| | || | ||| | ||| || ||||| || || || | ||| Sbjct 487156 ATGCGCAC-GGCAGAGCATCAGTGAGAAACTCTTGCTCGATCACGACTGCCTCGGTTATG 487098 Query 16148 ATATCGG-TGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGC 16206 || || | | | || || || ||| | ||||||||||| |||| || || || Sbjct 487097 ATGTCTTCTACCGCCTGCTTT-GATGGTCTGTGGTTTAGGTGGGAGAACAAGAGGCAGGC 487039 Query 16207 GAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGG 16266 || || ||| || || ||||| | ||| || || || || || || | ||||| Sbjct 487038 AAAATCTGTATGCAGACCCTCGTCACGAGAGATCAGCTCATTCGAGAAGGTGAGACCTGG 486979 Query 16267 CATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACC 16326 ||| || || ||||| | ||| || | | || || || || |||||||| || || Sbjct 486978 CATCAGGCCACGCTTCTTGAGCCAAAAGACAGATGCGAAGGAGCCAGAAAAGAAGATTCC 486919 Query 16327 CTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCA 16386 ||| || | ||| || || | | |||| || | || | || || | |||||| Sbjct 486918 CTCGACGGCTGCGAAGGCAACAAGGCGTTGAGCAAAAGTCGACTCCTTGTCCGAAATCCA 486859 Query 16387 TTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAA 16446 | | |||| | |||||||| | || ||| || || || ||||| | |||| Sbjct 486858 TCGAAGAGCCCAGTTGGCTTTTTTTCGGATGCAAGGAATGGTGTCAATGGCGTCGAACAG 486799 Query 16447 TT--TCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCT 16504 | | ||||| | || | | | || ||||| ||||||| ||||||||||| || Sbjct 486798 GTATTGTCTTTGTTTTGGCT--CCTTGATGTACGTGTCAATCAACAAACTGTACATCTCC 486741 Query 16505 GAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGT 16564 ||||| |||||||| || || ||||| ||||||||||| |||||||| | |||||| Sbjct 486740 GAGTGAATGTTCTCCATCATGATTTGAAAGCCATAGAAGCACCGAGCCTCGGGTATTTGG 486681 Query 16565 ACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAA 16624 ||||| | |||||||||| | || || ||||| || || || ||||| |||||||| Sbjct 486680 ACTTCGCCTGAAAATCGTTCGACGAGATTTTCATTGACAATGCCATCACTGGCAGCAAAG 486621 Query 16625 AACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGA---ATATGCCAATCT 16681 || || | | ||| | ||| ||| |||||||| | ||| | ||| || Sbjct 486620 AAGGCAAGGACGTGGGAGACGAAGTATCTTTCGTCATCGTTTAGACGTTCACTCCAGTCA 486561 Query 16682 TTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTA 16741 | | |||||| || | || |||||||||| ||||| || ||| | || || ||| Sbjct 486560 TGTTGATCTTTTGACAGGTCGACTTCTTCTGCTGTCCAGAAAGAAGCTTCGGCTTTCTTA 486501 Query 16742 TACATTTTCCA 16752 ||||| | ||| Sbjct 486500 TACATCTGCCA 486490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511414144292800