Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq9 248 1e-60 seq18 165 1e-35 >seq9 Length=1292822 Score = 248 bits (274), Expect = 1e-60 Identities = 573/853 (67%), Gaps = 18/853 (2%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 ||||| || |||||||| || || ||||| || || ||||| || | | || ||||| Sbjct 487334 TTTTGATAGTCACCCACGCGCTTCTCGAAGAAGTTGGTTTTGCCAGCAAGAGAGATATTG 487275 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATT-CAGAAAT 23962 |||||||| ||| | ||||| |||||||| || | ||| | | |||| || || Sbjct 487274 TCCATGAAGTCGAAGGGATTCGTAACATTGTAAAA-CTTGTTGTTGCCAAGAGCAACAAG 487216 Query 23963 CAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 24022 | | ||| || ||||| || || ||| ||||||| | ||||| || | | Sbjct 487215 TAGACGATCAGCAACAAATTCAATGTATTGCTTCATCAAGGTCGAGTTCATGCCGAGCAA 487156 Query 24023 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 24082 | || ||||| |||| ||||| ||||| || || ||| || || ||||| || Sbjct 487155 TGCGCACGGCAGAGCATCAGTGAGAAACTCTTGCTCGATCACGACTGCCTCGGTTATGAT 487096 Query 24083 AGATCTTACTGTTTC--TTCAC--TCGGTGGATACAATAAATGTTTAAACATCAAACATG 24138 | ||| | | || | || |||| | || || |||| | || | Sbjct 487095 GTCTTCTACCGCCTGCTTTGATGGTCTGTGGTT----TAGGTGGGAGAACAAGAGGCAGG 487040 Query 24139 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 24198 | ||||| || ||||||||||| | | || | || || || || ||||| || | Sbjct 487039 CAAAATCTGTATGCAGACCCTCGTCACGAGAGATCAGCTCATTCGAGAAGGTGAGACCTG 486980 Query 24199 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 24258 |||| ||||||||||| || |||||||| | || || || || ||||||||||| |||| Sbjct 486979 GCATCAGGCCACGCTTCTTGAGCCAAAAGACAGATGCGAAGGAGCCAGAAAAGAAGATTC 486920 Query 24259 CTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA-CCGGCGC--TGTCATGTATCC 24315 | || || || || ||||||| ||| | || || || || | | |||| |||| Sbjct 486919 CCTCGACGGCTGCGAAGGCAACAAGGCGTTGAGCAAAAGTCGACTCCTTGTCCGAAATCC 486860 Query 24316 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 24375 | ||||||| | ||| || ||| | ||||| || || || || || | || | Sbjct 486859 ATCGAAGAGCCCAGTTGGCTTTTTTTCGGATGCAAGGAATGGTGTCAATGGCGTCGAACA 486800 Query 24376 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 24435 | || | | ||| || || || | || || |||||||| | ||| ||||| |||| Sbjct 486799 GGTATTGTCTTTGTTTTGGCTCCTTGATGTACGTGTCAATCAACAAACTGTACATCTCCG 486740 Query 24436 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 24495 | |||||||| || || |||||||| || ||||| || | |||||||| || || | Sbjct 486739 AGTGAATGTTCTCCATCATGATTTGAAAGCCATAGAAGCACCGAGCCTCGGGTATTTGGA 486680 Query 24496 CTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 24555 |||| |||||||||| | | ||||||||| || || || |||||||| ||||| | Sbjct 486679 CTTCGCCTGAAAATCGTTCGACGAGATTTTCATTGACAATGCCATCACTGGCAGCAAAGA 486620 Query 24556 ACGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA---GTTTATTCCAATCA 24611 | || | || || | || ||| ||||||| | || ||| ||| | |||| ||| Sbjct 486619 AGGCAAGGACGTGGGAGACGAAGTATCTTTCGTCATCGT-TTAGACGTTCACTCCAGTCA 486561 Query 24612 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 24671 | |||||| || | || |||||||| ||||||| || || || || || || ||| Sbjct 486560 TGTTGATCTTTTGACAGGTCGACTTCTTCTGCTGTCCAGAAAGAAGCTTCGGCTTTCTTA 486501 Query 24672 TACATATTCCAGA 24684 ||||| | ||||| Sbjct 486500 TACATCTGCCAGA 486488 >seq18 Length=894979 Score = 165 bits (182), Expect = 1e-35 Identities = 1192/1904 (63%), Gaps = 59/1904 (3%) Strand=Plus/Minus Query 52796 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 52855 |||| ||||| |||||| || ||||| || || |||| | ||||| || ||||||||| Sbjct 725523 TCCTGGTCCACTGTGAACTGGATGGGTGCAGAGGCGGCCATGGTACGCAGGTAGTACATT 725464 Query 52856 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTC 52915 ||||| || | || || |||| || ||||||||| || | ||| | Sbjct 725463 CCCGTCTTCAAGCCAAGTTTCCACCCAGCAAAATGCATGGAGGTGATCTTGCCCATGGTA 725404 Query 52916 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 52975 || || | ||| ||||| | ||| || ||| || ||||| || |||| || ||| Sbjct 725403 GGCTCCTTGAGATGAATATTTAGAGACTGGGATTGGTCAATGAATGCACCCCGATCAGCA 725344 Query 52976 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 53035 ||||| | | || || ||| || ||||||| ||| || || | | || ||| Sbjct 725343 GCCATCTGCACAATAGTTCGTTGGCTGATCTCCCAAACAGTCTTGTACAATGCTTTGATA 725284 Query 53036 TCTTCTGGAAGGTTTG---TATTCTGAATAGATCCACCATCTACCATAATCCTATTCTTG 53092 || | |||| ||| | |||| || | || || ||||| | || || || ||||| Sbjct 725283 TCAGCAGGAATGTTGGGAATATTTTGGACTGAGCCGCCATCAGCAATGATTCTGTTCTTC 725224 Query 53093 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 53152 || | || ||| | || | | || | | || ||||| || || Sbjct 725223 ATGTTGTCGGACCAGAGACCCAGATCAACAAGATCTTTCAACAGCCATGGATTGACGACC 725164 Query 53153 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 53212 || |||||||||| || || | |||| ||| ||||| |||||| || || | | || Sbjct 725163 TGGAATTCTCCAGCCAGGACGCGACGAGAGTAGATATTCGAGGTATATGGCTCGAAACAC 725104 Query 53213 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 53272 || || |||||||| || || | || ||||| ||||||||||| ||||| | | | Sbjct 725103 TCGTTGTTTCCCAAGATCTGGGAGGTGGATGCTGTCGGCATAGGCGCCACAAGGAGAGAG 725044 Query 53273 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCGA 53331 || | || ||| | | ||| | | | || | || | |||||| ||| | |||||| Sbjct 725043 TTGCGAACACCATGCTTGGCGATGTCAGCCTTCA-AGCTGGCCCAATCCCACAAATCCGA 724985 Query 53332 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTA 53387 |||| || || || || || ||||| | || || || Sbjct 724984 CGGTGTGACGCCCCACATGTCGTACTGAAGCTCGCCTTTCGAGACTGGAGAACCCTCGTA 724925 Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 | || || |||| ||| || | || || ||||| || | ||| || | Sbjct 724924 C----GTCTCATATGTTCCGAGCTCTTTGGCAAGCTCACAGGAGGCAGTGAGTGCGCCAT 724869 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 ||| || ||||| || |||| | ||||| | ||||||| | ||| ||||| Sbjct 724868 GATAGATCGTTTCAAATATCTGGGTGTTTAGTTGACGTGCTTCAGGAGAATCGAATGGCA 724809 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 | || || ||| || ||||| | || |||||||||| ||| ||||||||||||| Sbjct 724808 GACGCAATGCAAGAAAGGCATCTGCAAGACCCTGAACACCAAGACCAATAGGTCTATGTC 724749 Query 53568 TCTTATTAGAGATTTCAGCTT-----CTGGAATAGGATAATAATTAATATCTATAATTTT 53622 ||| ||| || | || || | ||||||| | || || | | | Sbjct 724748 GGAAATTGC----TTCGGCGTGCCTCCTCGACT-GGATAATGGCTGCGTTCGATGACTCT 724694 Query 53623 ATTGAGGTTTC-TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTC 53681 || ||||| | || || || | |||||| || | || | ||| || | | | Sbjct 724693 GTTCAGGTTGCGTGTCACG-ACCTGGACCACTTCGTGGAGGCGGCCAAAGTCGTACTCGC 724635 Query 53682 CATCTATTACAAACATGTTCAATGC-AATAG------ATGCCAGATTACAAACGGCTACC 53734 | || | | || || | | || || || |||||||||| ||||| || ||| Sbjct 724634 C-TCGACCAGAATCAACATAAGTGGGAAGAGCCAACGATGCCAGATTGCAAACTGCGACC 724576 Query 53735 TCATTAGCATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCC 53793 |||| | | ||| |||| | ||||||||||| ||||| | ||| || || Sbjct 724575 TCATCTGG-TGCGCTGTATTCAACAATCTCAGTGCAGAGATTGGAGCTTCGGATAGTCCC 724517 Query 53794 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACC 53853 | || | || || ||||||||||||||||||||||||||||| ||| | ||||| || Sbjct 724516 AAGGTTCTTCTGGTTGCTCTTTTTGTTACACGCATCCTTATAAAGCATGTACGGCGTCCC 724457 Query 53854 AGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTT 53913 ||| || |||| || || | ||| || | ||||| | |||| | | || ||| Sbjct 724456 AGTCTCTGTCTGAGACTCAAGAATTGCATACCAGAGTTTCTGGGCCT---TCACAGCTTT 724400 Query 53914 -GTATCTC--TTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAAC 53970 | | | ||| | |||||| || | | || |||||||| || | || Sbjct 724399 CCGACCACGGCCTTCCTTCTCGTATCTCTCGTAAAGTGCCTCGAACTCGTCACCATACAC 724340 Query 53971 ATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 54030 || ||| || ||| || | || || | | | ||| || | | || || Sbjct 724339 ATCTGCCAGGCCTGGAGCCTCGTGAGGGCAGAAGAGAGTCCAGTCAAGATTCTTCTCGAC 724280 Query 54031 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTT 54089 |||||||| || || || || |||| ||||| ||| || ||||||| || | || Sbjct 724279 ACGTTTCATGAATAGGTCTGGGGTCCAGAGAGC-ATAGAAGAGATCTCGGGCCCGGCTTT 724221 Query 54090 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 54149 |||| || || |||||| ||| || | || | | | || | |||||| || | Sbjct 724220 CCTCCTTGCCGTGATTCTTGCGAAGGTCCAAAAAGTCAAAGACGTCGGCATGCCATGGCT 724161 Query 54150 CCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 54209 | | ||||| | | | || || || ||||| || || ||||| | || | ||||| Sbjct 724160 CAAGATATATAGCGAAGGCACCCGGACGCTTGTTGCCGCCTTGATCGACATAACGAGCGG 724101 Query 54210 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA 54269 |||| || | || | ||||| ||| | | || ||||||| ||||| || || | Sbjct 724100 TGTTGTTGAAGACGCGTAACATAGGAGTCAATCCGTTGGATGACCCATTTGTGCCACCAA 724041 Query 54270 TATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGACCTATCCCCCCTGCCATTTTA 54328 | ||| ||| | || ||||| | | | | | || || || || || || | || Sbjct 724040 TGTAGGAACCAGTAGCGCGAAT-GCAGTGAACGTTGAGCCCAATACCTCCAGCGTTCTTG 723982 Query 54329 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 54388 ||||| | || || ||| | || || |||||||| || ||||| || || |||| Sbjct 723981 GAGATCATGGCACAGATTTTGAGAGTGTCGTAGATGCCTTCAATACTGTCCTCTTTCATA 723922 Query 54389 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 54448 | | || || ||| | || || | || || || || || | |||||| Sbjct 723921 TCGATGAGGAAGCAGGACGCCAACTGTCCTTGCGGTGTACCAGCGTTGAACAGCGTAGGA 723862 Query 54449 GAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATA 54508 ||||| || || || | |||| || | || ||||| || || || || || || Sbjct 723861 GAAGCATGTGTGAAGAACTTTTGGGACATGAGGTTGTAAGTTTCAATCGCCCTCTCGATG 723802 Query 54509 TC----CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 54564 || |||| |||| || || | |||||||| | |||||| || ||||| ||| | Sbjct 723801 TCGTCGCCATGGATG----CCCACAGAAACACGCATAAGCATGTGTTGGGGTCTCTCAGC 723746 Query 54565 GATCTTG-TTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 54623 | |||| || || || || | || || |||||||||||| || || ||||| | Sbjct 723745 TA-CTTGTTTACCAATCTTGAGGAGATATGAACGTTCCAAAGTTTTGAAGCCGAAATATT 723687 Query 54624 TGTA--TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTT 54665 ||| ||||| |||| || || | ||| | ||||| |||| Sbjct 723686 GGTAATTGAAA--TCTCTGTCATAGACGATAGCAGAGTTCAGTT 723645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721303139200