Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9 233 2e-56 seq5 129 6e-25 seq14 89.7 5e-13 >seq9 Length=1292822 Score = 233 bits (258), Expect = 2e-56 Identities = 464/676 (69%), Gaps = 26/676 (4%) Strand=Plus/Plus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| ||||| || || ||||| || || |||||||| | || || || |||||||| Sbjct 486490 TGGCAGATGTATAAGAAAGCCGAAGCTTCTTTCTGGACAGCAGAAGAAGTCGACCTGTCA 486549 Query 116699 AAGGA-CACGAGCGACTGG---GAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 || || || | |||||| || || | ||||| |||| | | ||| || || Sbjct 486550 AAAGATCAACAT-GACTGGAGTGAACGTCTAAACGATGACGAAAGATACTTCGTCTCCCA 486608 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||| || ||||| || || ||||| || ||||| ||||| || ||||| ||||| || || Sbjct 486609 CGTCCTTGCCTTCTTTGCTGCCAGTGATGGCATTGTCAATGAAAATCTCGTCGAACGATT 486668 Query 116815 CGCTCAGGAG--GTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||||| | || || | ||||||| ||||||||||| |||||||| ||| ||| Sbjct 486669 T--TCAGGCGAAGTCCAAATACCCGAGGCTCGGTGCTTCTATGGCTTTCAAATCATGATG 486726 Query 116873 GAGAACGTGCACTCGGAAATGTA---TTCGACCCTCATCGACACGTACGT----GCGCTC 116925 |||||| | |||||||| ||||| || | | || ||||||||| | | || Sbjct 486727 GAGAACATTCACTCGGAGATGTACAGTTTGT---TGATTGACACGTACATCAAGGAGCCA 486783 Query 116926 TTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAA 116985 | || || | ||| | ||||||| || || || || ||| || | | || Sbjct 486784 AAACAAAGACAATACCTGTTCG----ACGCCATTGACACCATTCCTTGCATCCGAAAAAA 486839 Query 116986 GGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGT 117045 ||| | ||||| || || ||||| | | || ||| | | || | | ||||| || Sbjct 486840 AGCCAACTGGGCTCTTCGATGGATTTCGGACAAGGAGTCGACTTTTGCTCAACGCCTTGT 486899 Query 117046 GGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCT 117105 |||||||| ||||||||||| |||||||||| ||| ||||| | | |||||||| Sbjct 486900 TGCCTTCGCAGCCGTCGAGGGAATCTTCTTTTCTGGCTCCTTCGCATCTGTCTTTTGGCT 486959 Query 117106 CAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 |||||| || ||||| ||||| || || || ||| || ||||| ||||| | ||||| Sbjct 486960 CAAGAAGCGTGGCCTGATGCCAGGTCTCACCTTCTCGAATGAGCTGATCTCTCGTGACGA 487019 Query 117166 GGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGC 117225 |||||||||| || |||||||| | ||||| || | || |||| | | Sbjct 487020 GGGTCTGCATACAGATTTTGCCTGCCTCTTGTTCTCCCACCTAAACCACAGACC-ATCAA 487078 Query 117226 GGCGCGCGTCAG-GGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCG 117284 || ||| || || ||| | ||||| || |||| |||||||| || ||||| | Sbjct 487079 AGCAGGCGGTAGAAGACATCATAACCGAGGCAGTCGTGATCGAGCAAGAGTTTCTCACTG 487138 Query 117285 AAGCGCTGCCGGTGCG 117300 | || ||||| ||||| Sbjct 487139 ATGCTCTGCC-GTGCG 487153 Score = 107 bits (118), Expect = 2e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || ||||| |||||||| |||| ||||| ||| || | | | | | ||| Sbjct 437385 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCAGTGATACTATCGATAATGTGAAGAGC 437326 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||| || ||| |||| ||||| || || |||| ||| |||||| Sbjct 437325 AAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAGCGTCTTATCTTCGCCGGCAAA 437266 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| || ||||| |||||||||||||||||||||| | || || || Sbjct 437265 CAGCTCGAAGACGGCCGTACCCTATCCGACTACAACATCCAGAAGGAGTCAACACTTCA 437207 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40695 AATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAG 40754 |||| |||| || || || || || || |||||||| | || ||||| | | |||| Sbjct 437122 AATAGTCGTCAAGACTCTGACTGGGAAGACCATCACTCTGGAGGTCGAGTCGTCTGACAC 437063 Query 40755 CGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814 | | | | ||| ||||||| ||||| ||||| || ||| |||| |||||||| Sbjct 437062 TATCGACAATGTAAAGAGCAAAATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAACG 437003 Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 ||| |||| ||| || ||||| || || || | || ||||| ||||||||||||||| Sbjct 437002 ACTTATCTTCGCTGGTAAACAACTCGAAGATGGCCGAACCCTATCCGACTACAACATCCA 436943 Query 40875 GAAGGAGGCCACGCTGCATCTAGT 40898 ||| || | || || || || || Sbjct 436942 GAAAGAATCTACTCTTCACCTCGT 436919 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || ||||| ||||||||| | || || ||| | || Sbjct 436899 ATGCAAATCTTCGTCAAGACATTGACCGGCAAGACCATCACCTTAGAAGTTGAATCGTCC 436840 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | ||| || || | || || || ||||| || | || ||| Sbjct 436839 GACACCATCGATAATGTGAAGAGCAAGATCCAGGATAAGGAAGGCATTCCTCCAGATCAG 436780 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| ||| ||||| |||||||| || | ||||| || |||||||||| Sbjct 436779 CAGCGCTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACACTGTCCGACTACAAC 436720 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||| || | || || ||||| || Sbjct 436719 ATTCAGAAAGAATCTACACTACATCTTGT 436691 >seq5 Length=1929936 Score = 129 bits (142), Expect = 6e-25 Identities = 138/180 (77%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || |||||||| |||||||| |||| |||||| || |||||| | Sbjct 1366241 TTCGTCAAGACCCTAACGGGCAAGACCATCACGCTCGAGGTCGAATCCTCCGACACAATT 1366300 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| ||||| || || | ||||||||||||||||| | ||||||||||| || Sbjct 1366301 GACAACG-TCAAGAGCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAACGCCT 1366359 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| |||||||| || || || | |||||||| |||||||| |||||||| Sbjct 1366360 GATCTTCGCCGGCAAACAACTCGAAGATGGCCGCACCCTGTCAGACTACAATATCCAGAA 1366419 >seq14 Length=1110587 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | || || || ||||| |||| ||| ||||| || || || Sbjct 440853 GACAAGGAGGGCATCCCACCCGATCAACAGCGACTGATCTTCGCCGGCAAGCAACTCGAA 440912 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||| || || ||| ||||||||| ||||||||||| | || || ||||| ||| Sbjct 440913 GACGGCCGGACTCTCTCCGACTACAATATCCAGAAGGAATCAACCCTCCATCTCGTG 440969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218942390400