Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5 91.5 2e-13 seq9 84.2 3e-11 >seq5 Length=1929936 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/186 (72%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 42992 CTCCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGA 43050 || |||| || |||||||| || | ||| || || | || || || || || || |||| Sbjct 1366424 CTACTTTCTGGATATTGTAGTCTGACAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCGA 1366365 Query 43051 ATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG 43110 | || || || |||||||| | || | || ||| ||||| ||| || |||| || Sbjct 1366364 AGATCAGGCGTTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGCTCTTGA-CG 1366306 Query 43111 TCGCCACC-GTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | || |||||| ||||| || |||| ||||||||| ||||||||||| ||||| Sbjct 1366305 TTGTCAATTGTGTCGGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGTTAGGGTCTTG 1366246 Query 43170 ACAAAG 43175 || ||| Sbjct 1366245 ACGAAG 1366240 >seq9 Length=1292822 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || || ||||| ||||| || | ||| || || | || || |||||||| || ||||| Sbjct 436709 TCTTTCTGAATGTTGTAGTCGGACAGTGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAG 436768 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | |||||||| || | || | || ||||| ||| ||| || || | | Sbjct 436769 ATCAAGCGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGGATCTTGCTCTTCACATTA 436828 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| |||||| || || | |||||||| ||||| || | ||||| || Sbjct 436829 TCGATGGTGTCGGACGATTCAACTTCTAAGGTGATGGTCTTGCCGGTCAATGTCTTGACG 436888 Query 43173 AAGATTTGCAT 43183 ||||||||||| Sbjct 436889 AAGATTTGCAT 436899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817314091200