Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq9 87.8 1e-12 >seq9 Length=1292822 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||| |||| |||||||||||| || || || ||||||||||||| Sbjct 437183 CCTCCACGGAGACGAAGAACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCGGAT 437242 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||| | |||||||| || ||||||| | || |||||| ||| Sbjct 437243 AGGGTACGGCCGTCTTCGAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGGGA 437302 Query 18219 ACGCCTTCCTTATCGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | || ||||| || ||| ||| | ||| || | | | ||| |||| || |||| Sbjct 437303 ATACCCTCCTTGTCCTGAATCTTGCT-CTTCACATTATCGATAGTATCACTGGACTCGAC 437361 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 || | |||||| | |||||||| | ||| Sbjct 437362 CTCGAGAGTGATGGTCTTGCCGGTAACTGT 437391 Score = 82.4 bits (90), Expect = 6e-11 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | |||||| || |||||||| || ||||||||||||| | ||| | |||| Sbjct 436916 AGGACGAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGATAGGGTTCGGCCATCT 436975 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||| || || ||||||||| ||| |||||| ||| | || ||||| || Sbjct 436976 TCGAGTTGTTTACCAGCGAAGATAAGTCGTTGCTGATCCGGGGGAATACCCTCCTTGTCC 437035 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| ||| || | | | ||||||| | |||| || | |||||| | Sbjct 437036 TGAATTTTGCTCTTTACATTGTCGATAGTGTCAGACGACTCGACCTCCAGAGTGATGGTC 437095 Query 18294 TTGCCGGTCA 18303 || || |||| Sbjct 437096 TTCCCAGTCA 437105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343815069800