Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq18 282 4e-71 seq9 172 5e-38 >seq18 Length=894979 Score = 282 bits (312), Expect = 4e-71 Identities = 1020/1572 (65%), Gaps = 56/1572 (4%) Strand=Plus/Minus Query 22435 ATCTTTGACCAG--ATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGG 22492 |||||| | ||| ||| | || || || || || || || | || |||||| || | Sbjct 725191 ATCTTTCAACAGCCATG--GATTGACGACCTGGAATTCTCCAGCCAGGACGCGACGAGAG 725134 Query 22493 TAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAA 22552 || || || || || | || |||||| | || |||||||||| ||||| | ||| || Sbjct 725133 TAGATATTCGAGGTATATGGCTCGAAACACTCGTTGTTTCCCAAGATCTGGGAGGTGGAT 725074 Query 22553 GCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTC 22612 || |||||||| ||||||| || || ||||| | | || ||||| | || | | | Sbjct 725073 GCTGTCGGCATAGGCGCCACAAGGAGAGAGTTGCGAACACCATGCTTGGCGATGTCAGCC 725014 Query 22613 TTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGC 22672 || | | | ||| ||||||| ||| ||||| || || | ||||||| ||||| || Sbjct 725013 TTCAAGCTGGCCCAATCCCACAAATCCGACGGTGTGAC---GCCCCACATGTCGTACTGA 724957 Query 22673 AACACGCC----GCGACTCGCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGC 22728 | | |||| | |||| || || |||||||| || || | || | || Sbjct 724956 AGCTCGCCTTTCGAGACT----GGAGAACCCTCGTACGTCTCATATGTTCCG-AGCTCTT 724902 Query 22729 -GGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGT 22787 |||||| || ||| || | ||||| | ||| || || || || || | ||| Sbjct 724901 TGGCAAGCTCACAGGAGGCAGTGAGTGCGCCATGATAGATCGTTTCAAATATCTGGGTGT 724842 Query 22788 TCAATT--CG-GCGGC-GGCGACGCTTTCGTACGGCATACGCATCAT-CACGAACG-CGT 22841 | | || || || | || || ||| | |||| ||||| || || ||| | | | Sbjct 724841 TTAGTTGACGTGCTTCAGGAGAA----TCGAATGGCAGACGCA--ATGCAAGAAAGGCAT 724788 Query 22842 CCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGA------TTCGACACTT 22895 | || | ||||||||| || | ||| || |||| | | || || |||| | Sbjct 724787 CTGCAAGACCCTGAACACCAAGACCAATAGGTC--TATGTCGGAAATTGCTTCGGCG--- 724733 Query 22896 TTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCACAA 22955 |||||| | ||||| | ||||| |||||||| ||| | ||||| | Sbjct 724732 -TGCCTCCTCGACTGGATAATGGCTGCGTTCGATGACTCTGTTCAGGTTGCGTGTCACGA 724674 Query 22956 TTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCC-CGATTGTA--CAACAAACT 23012 | | |||||||||| |||| ||| | ||||| | Sbjct 724673 CCTGGACCACTTCGTGGAGGCGGCCAAAGTCGTACTCGCCTCGACCAGAATCAACATAAG 724614 Query 23013 TGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTA 23072 || | || | ||| || |||||||| || || ||||| ||| | |||| || | Sbjct 724613 TGGGAAGAGCCAACGATGCCAGATTGCAAACTGCGACCTCATCTGGTGCGCTGTATTCAA 724554 Query 23073 CAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTC 23132 |||| || || || |||||| | || || || | || |||||||||| ||| Sbjct 724553 CAATCTCAGTGCAGAGATTGGAGCTTCGGATAGTCCCAAGGTTCTTCTGGTTGCTCTTTT 724494 Query 23133 GATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGA 23192 || |||| |||||| || |||||||||||||| || ||||| ||| ||||| | | Sbjct 724493 TGTTACACGCATCCTTATAAAGCATGTACGGCGTCCCAGTCTCTGTCTGAGACTCAAGAA 724434 Query 23193 TCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTAC 23251 | || ||| | |||| || | ||| | | || | | |||||| | |||||| Sbjct 724433 TTGCATACCAGAGTTTCTGGGCCTTCACAGCTTTC-CGACCACGGCCTTCCTTCTCGTAT 724375 Query 23252 TTTTGGTACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCAT 23310 | | ||| | || || || ||| |||| || ||| || |||||||| || | | Sbjct 724374 CTCTCGTAAAGTGCCTCGAACTCGTCACCATACACA-TCTGCCAGGCCTGGAGCCTCGTG 724316 Query 23311 CGGACACATGAGACTCCA--CATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGT 23368 || || | |||| |||| || || || || || || ||| |||| || || || || Sbjct 724315 AGGGCAGAAGAGAGTCCAGTCAA-GATTC-TTCTCGACACGTTTCATGAATAGGTCTGGG 724258 Query 23369 ATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTC 23428 |||| ||||| ||||| || || ||||| || ||||| |||||| ||||| Sbjct 724257 GTCCAGAGAGCATAGAAGAGATCTCGGGCCCGGCTTTCCTCCTTGCCGTGATTCTTGCGA 724198 Query 23429 AAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCC 23488 | ||||||||||| || ||||| |||||||| ||||| || || | || || || ||| Sbjct 724197 AGGTCCAAAAAGTCAAAGACGTCGGCATGCCATGGCTCAAGATATATAGCGAAGGCACCC 724138 Query 23489 GGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATC 23548 || | ||| |||||||| |||||||| ||||| || ||||||||| | || | || ||| Sbjct 724137 GGACGCTTGTTGCCGCCTTGATCGACATAACGAGCGGTGTTGTTGAAGACGCGTAACATA 724078 Query 23549 GGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACG 23608 || | |||||||| | || | ||| | | ||||| | || |||| | Sbjct 724077 GGAGTCAATCCGTTGGATGACCCATTTGTGCCACCAATGTAGGAACCAGTAGCGCGAATG 724018 Query 23609 TTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGA 23668 |||||||| || || || ||||| | || || ||||| || || ||| ||| Sbjct 724017 CAGTGAACGTTGAGCCCAATACCTCCAGCGTTCTTGGAGATCATGGCACAGATTTTGAGA 723958 Query 23669 GTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATT 23728 |||||||||||||| || || ||||||||||| | ||| | ||| || || | || Sbjct 723957 GTGTCGTAGATGCCTTCAATACTGTCCTCTTTCATATCGATGAGGAAGCAGGACGCCAAC 723898 Query 23729 TGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTC 23788 || ||| || ||| | || |||||| || || || || || ||| | | Sbjct 723897 TGTCCTTGCGGTGTACCAGCGTTGAACAGCGTAGGAGAAGCATGTGTGAAGAACTTTTGG 723838 Query 23789 GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCG 23848 ||||| || ||||| || || || || || ||||| || || || || || | | Sbjct 723837 GACATGAGGTTGTAAGTTTCAATCGCCCTCTCGATGTCGTCGCCATGGATGCCCACAGAA 723778 Query 23849 ACGCGCATCATCATGTATTGAGGTCTCTCGAC--CGTGACGCCGTTAATTTTGAACAGAT 23906 || ||||| | ||||| ||| |||||||| | | || | ||| |||| |||| Sbjct 723777 ACACGCATAAGCATGTGTTGGGGTCTCTCAGCTACTTGTTTAC--CAATCTTGAGGAGAT 723720 Query 23907 ATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTA 23966 ||||||||| || ||||| || || ||||| | || || || || | || | || | Sbjct 723719 ATGAACGTTCCAAAGTTTTGAAGCCGAAATATTGGTAATTGAAATCTCTGTCATAGACGA 723660 Query 23967 TGGCCGAATTCA 23978 | || || |||| Sbjct 723659 TAGCAGAGTTCA 723648 >seq9 Length=1292822 Score = 172 bits (190), Expect = 5e-38 Identities = 480/729 (66%), Gaps = 23/729 (3%) Strand=Plus/Plus Query 57573 TGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCT 57632 ||| | ||||| || || || ||||| || || ||||| | |||||||| |||||||| Sbjct 486490 TGGCAGATGTATAAGAAAGCCGAAGCTTCTTTCTGGACAGCAGAAGAAGTCGACCTGTCA 486549 Query 57633 AAGGATCTGAGCGATTGG---GATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACAC 57689 || |||| || ||| || || || || || ||| | || | ||| Sbjct 486550 AAAGATCAACATGACTGGAGTGAACGTCTAAACGATGACGAAAGATACTTCGTCTCCCAC 486609 Query 57690 GTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTT 57749 || | || || || || || ||||| ||||| || || ||| | |||||| ||||| Sbjct 486610 GTCCTTGCCTTCTTTGCTGCCAGTGATGGCATTGTCAATGAAAATCTCGTCGAACGATTT 486669 Query 57750 TCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAA 57809 ||| ||||| ||| | | ||||| | ||||| || || |||||| | || || Sbjct 486670 TCAGGCGAAGTCCAAATACCCGAGGCTCGGTGCTTCTATGGCTTTCAAATCATGATGGAG 486729 Query 57810 AACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGAC----AACGA 57865 ||| | || || || ||||| | | || || |||||| | ||||| ||| | Sbjct 486730 AACATTCACTCGGAGATGTACAGTTTGTTGATTGACACGTACATCAAGGAGCCAAAACAA 486789 Query 57866 CGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 || || || |||||| |||| || || || || || ||| || || || | Sbjct 486790 AGACAA---TAC-CTGTTCGACGCCATTGACACCATTCCTTGCATCCGAAAAAAAGCCAA 486845 Query 57926 GTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAGAGGCTAATCGC 57982 ||| | | |||||| | || || | || || || | | || | || Sbjct 486846 CTGGGCTCTTCGATGGATTTCG---GACAAGGAGTCGACTTTTGCTCAACGCCTTGTTGC 486902 Query 57983 GTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAA 58042 ||||| |||||||| || || |||||||| ||| ||| || | | |||||| | || Sbjct 486903 CTTCGCAGCCGTCGAGGGAATCTTCTTTTCTGGCTCCTTCGCATCTGTCTTTTGGCTCAA 486962 Query 58043 GAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGG 58102 ||| || ||||||||||| || || || || || ||| |||| || || |||||||| Sbjct 486963 GAAGCGTGGCCTGATGCCAGGTCTCACCTTCTCGAATGAGCTGATCTCTCGTGACGAGGG 487022 Query 58103 TCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAAC---CGACGCG 58159 ||| ||||| |||||||| ||||| ||| ||| ||| | | | | || | | || Sbjct 487023 TCTGCATACAGATTTTGCCTGCCTCTTGTTCTCCCACCTAAACCACAGACCATCAAAGCA 487082 Query 58160 GGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGA 58219 || || | ||||| || |||||||| |||| |||||| | |||||| |||| || Sbjct 487083 GG--CG-GTAGAAGACATCATAACCGAGGCAGTCGTGATCGAGCAAGAGTTTCTCACTGA 487139 Query 58220 AGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTT 58279 || || ||| || ||||||| |||||| |||||| | |||||||| || Sbjct 487140 TGCTCTGCCGTGCGCATTGCTCGGCATGAACTCGACCTTGATGAAGCAATACATTGAATT 487199 Query 58280 TGTTGCCGA 58288 |||||| || Sbjct 487200 TGTTGCTGA 487208 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/205 (71%), Gaps = 6/205 (3%) Strand=Plus/Minus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| ||||||||||| || || || ||||| | || || || |||| |||| | ||| Sbjct 437117 TCGTCAAGACTCTGACTGGGAAGACCATCACTCTGGAGGTCGAGTCGTCTGACACTATCG 437058 Query 31263 AAACGGTCAAACAG-AGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | | || ||| || | ||| ||||||||| || | || || || ||||| || || Sbjct 437057 ACAATGT-AAAGAGCAAAATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAACGACTT 436999 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGA--CTCTATGACTATGAGCGATTATAACATTCAAA 31379 || |||||||| ||||| | ||||| | | |||| ||| || ||||| || | Sbjct 436998 ATCTTCGCTGGTAAACAACTCGAAGATGGCCGAACCCTAT--CCGACTACAACATCCAGA 436941 Query 31380 AAGAATCGACTCTTCATCTGGTACT 31404 ||||||| |||||||| || || || Sbjct 436940 AAGAATCTACTCTTCACCTCGTCCT 436916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766177116800