Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq9 136 8e-27 >seq9 Length=1292822 Score = 136 bits (150), Expect = 8e-27 Identities = 299/442 (68%), Gaps = 7/442 (2%) Strand=Plus/Plus Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 |||||||||| || || || || |||||||||||| ||| | |||||||| | || | Sbjct 486896 TTGTTGCCTTCGCAGCCGTCGAGGGAATCTTCTTTTCTGGCTCCTTCGCATCTGTCTTTT 486955 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || ||||||| | || | |||| |||||||||| ||| |||||| | || ||| | | Sbjct 486956 GGCTCAAGAAGCGTGGCCTGATGCCAGGTCTCACCTTCTCGAATGAGCTGATCTCTCGTG 487015 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCC 102095 |||| ||||| ||| || ||||| ||| | |||| | | | | | Sbjct 487016 ACGAGGGTCTGCATACAGATTTTGCCTGCCTCTTGTTCTCCCA---CCTAAACCACAGAC 487072 Query 102096 CATCAAGAGAAAG-GATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT 102154 |||||| || | | | | || || | || || || ||| || || ||||| ||| Sbjct 487073 CATCAA-AGCAGGCGGTAGAAGACATCATAACCGAGGCAGTCGTGATCGAGCAAGAGTTT 487131 Query 102155 CTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTAC 102214 ||||| | | | ||||| ||| | || ||||||| | ||||||| || ||| Sbjct 487132 CTCACTGATGCTCTGCCGTGCGCATTGCTCGGCATGAACTCGACCTTGATGAAGCAATAC 487191 Query 102215 ATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAA-AAGCACTATAATGT 102273 ||||||||||| || ||| ||| | |||| | || | | || ||| || ||||| Sbjct 487192 ATTGAATTTGTTGCTGATCGTCTACTTGTTGCTCTTGG-CAACAACAAGTTTTACAATGT 487250 Query 102274 TACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGA 102333 ||| || |||||| |||||||||||||| || || | || |||||||| || || Sbjct 487251 TACGAATCCCTTCGACTTCATGGACAATATCTCTCTTGCTGGCAAAACCAACTTCTTCGA 487310 Query 102334 AAAGAGAGTCGCCGAGTATCAA 102355 ||| | || | || |||||| Sbjct 487311 GAAGCGCGTGGGTGACTATCAA 487332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583492838200