Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq9 260 2e-64 seq18 181 1e-40 >seq9 Length=1292822 Score = 260 bits (288), Expect = 2e-64 Identities = 572/849 (67%), Gaps = 10/849 (1%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 ||||| || |||||||| || || ||||| || || ||||| || | | || ||||| Sbjct 487334 TTTTGATAGTCACCCACGCGCTTCTCGAAGAAGTTGGTTTTGCCAGCAAGAGAGATATTG 487275 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 |||||||| || || ||||| ||||||||||||| || || || | || || Sbjct 487274 TCCATGAAGTCGAAGGGATTCGTAACATTGTAAAACTTGTTGTTGCCAAGAGCAACAAGT 487215 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 | | ||| || || ||||| || ||| ||||||| | ||||| || | | | Sbjct 487214 AGACGATCAGCAACAAATTCAATGTATTGCTTCATCAAGGTCGAGTTCATGCCGAGCAAT 487155 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 || ||||| |||| ||||| ||||| || || || || | ||||| || Sbjct 487154 GCGCACGGCAGAGCATCAGTGAGAAACTCTTGCTCGATCACGACTGCCTCGGTTATGATG 487095 Query 33531 AAT-CTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAA 33589 | ||| || | ||| | ||| || || || |||| | || || || Sbjct 487094 TCTTCTACCGCCTGCTTTGAT-GGTCTGTGGTTTAGGTGGGAGAACAAGAGGCAGGCAAA 487036 Query 33590 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649 ||| |||||||||||||| | | || | || || || || ||||| || ||||| Sbjct 487035 ATCTGTATGCAGACCCTCGTCACGAGAGATCAGCTCATTCGAGAAGGTGAGACCTGGCAT 486976 Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709 ||||||||||| || |||||||| | || ||||| || || |||||||||||||| || Sbjct 486975 CAGGCCACGCTTCTTGAGCCAAAAGACAGATGCGAAGGAGCCAGAAAAGAAGATTCCCTC 486916 Query 33710 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC-CGGCGC--TGTCATGTATCCACTT 33766 || || || ||||||| ||| | | || || || | | |||| ||||| Sbjct 486915 GACGGCTGCGAAGGCAACAAGGCGTTGAGCAAAAGTCGACTCCTTGTCCGAAATCCATCG 486856 Query 33767 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 ||||||| | ||| || ||| | ||||| || || || ||||| | || || || Sbjct 486855 AAGAGCCCAGTTGGCTTTTTTTCGGATGCAAGGAATGGTGTCAATGGCGTCGAACAGGTA 486796 Query 33827 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33886 | | ||| || || || | || || || ||||| | ||| ||||| ||||| || Sbjct 486795 TTGTCTTTGTTTTGGCTCCTTGATGTACGTGTCAATCAACAAACTGTACATCTCCGAGTG 486736 Query 33887 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 |||||| || || || ||||| || ||||| || | |||||||| || || ||||| Sbjct 486735 AATGTTCTCCATCATGATTTGAAAGCCATAGAAGCACCGAGCCTCGGGTATTTGGACTTC 486676 Query 33947 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGC 34006 |||||||||| | | ||||||||| || || ||||||||||| ||||| || || Sbjct 486675 GCCTGAAAATCGTTCGACGAGATTTTCATTGACAATGCCATCACTGGCAGCAAAGAAGGC 486616 Query 34007 CAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA---GTTTATTCCAATCATTGA 34062 | || || | || ||| ||||||| | || ||| ||| | |||| |||| Sbjct 486615 AAGGACGTGGGAGACGAAGTATCTTTCGTCATCGT-TTAGACGTTCACTCCAGTCATGTT 486557 Query 34063 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 34122 |||||| || | || |||||||| ||||||| || || || || || || ||||||| Sbjct 486556 GATCTTTTGACAGGTCGACTTCTTCTGCTGTCCAGAAAGAAGCTTCGGCTTTCTTATACA 486497 Query 34123 TATTCCAGA 34131 | | ||||| Sbjct 486496 TCTGCCAGA 486488 >seq18 Length=894979 Score = 181 bits (200), Expect = 1e-40 Identities = 1178/1871 (63%), Gaps = 57/1871 (3%) Strand=Plus/Minus Query 62034 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62093 |||| ||||| |||||| || ||||| || || |||| | ||||| || ||||||||| Sbjct 725523 TCCTGGTCCACTGTGAACTGGATGGGTGCAGAGGCGGCCATGGTACGCAGGTAGTACATT 725464 Query 62094 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62153 ||||| || | || || |||| || ||||||||| || | ||| | Sbjct 725463 CCCGTCTTCAAGCCAAGTTTCCACCCAGCAAAATGCATGGAGGTGATCTTGCCCATGGTA 725404 Query 62154 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62213 || || | ||| ||||| | ||| || ||| || ||||| || |||| || ||| Sbjct 725403 GGCTCCTTGAGATGAATATTTAGAGACTGGGATTGGTCAATGAATGCACCCCGATCAGCA 725344 Query 62214 GCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62273 ||||| | | || || ||| || ||||||| ||| || || | | || ||| Sbjct 725343 GCCATCTGCACAATAGTTCGTTGGCTGATCTCCCAAACAGTCTTGTACAATGCTTTGATA 725284 Query 62274 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTG 62330 || | |||| ||| | |||| || | || || ||||| | || || || ||||| Sbjct 725283 TCAGCAGGAATGTTGGGAATATTTTGGACTGAGCCGCCATCAGCAATGATTCTGTTCTTC 725224 Query 62331 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACT 62390 || | || ||| | || | | || | | || || || || || Sbjct 725223 ATGTTGTCGGACCAGAGACCCAGATCAACAAGATCTTTCAACAGCCATGGATTGACGACC 725164 Query 62391 TGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGAC 62450 ||||||||||||| || || | |||| ||| ||||| |||||| || || | || Sbjct 725163 TGGAATTCTCCAGCCAGGACGCGACGAGAGTAGATATTCGAGGTATATGGCTCGAAACAC 725104 Query 62451 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62510 || || |||||||| || || | || ||||| ||||||||||| ||||| | | | Sbjct 725103 TCGTTGTTTCCCAAGATCTGGGAGGTGGATGCTGTCGGCATAGGCGCCACAAGGAGAGAG 725044 Query 62511 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTA-GATGTTCCCAATTCCAAAGATCCGA 62569 || | || ||| | | ||| | | | || | | || |||||| ||| | |||||| Sbjct 725043 TTGCGAACACCATGCTTGGCGATGTCAGCCTTCAAGCTGG-CCCAATCCCACAAATCCGA 724985 Query 62570 CGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTT----ACTGGCGTACGATCCTA 62625 |||| || || || || || || ||||| | || || || Sbjct 724984 CGGTGTGACGCCCCACATGTCGTACTGAAGCTCGCCTTTCGAGACTGGAGAACCCTCGTA 724925 Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 | || ||||||| ||| || | || || | ||| || | ||| || | Sbjct 724924 C----GTCTCATATGTTCCGAGCTCTTTGGCAAGCTCACAGGAGGCAGTGAGTGCGCCAT 724869 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||| || |||||||| |||| | ||||| | ||||||| || ||| ||||| Sbjct 724868 GATAGATCGTTTCAAATATCTGGGTGTTTAGTTGACGTGCTTCAGGAGAATCGAATGGCA 724809 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | || || ||| || || || | || |||||||||| ||| ||||||||||||| Sbjct 724808 GACGCAATGCAAGAAAGGCATCTGCAAGACCCTGAACACCAAGACCAATAGGTCTATGTC 724749 Query 62806 TCTTATTAGAGATTTCAGCTT-----CTGGAATAGGATAATAATTAATATCTATAATTTT 62860 ||| ||| || | || || | ||||||| | || || | | | Sbjct 724748 GGAAATTGC----TTCGGCGTGCCTCCTCGACT-GGATAATGGCTGCGTTCGATGACTCT 724694 Query 62861 ATTGAGATTTC-TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-TCGC 62918 || || || | || || || | |||||| || | || | ||| || | |||| Sbjct 724693 GTTCAGGTTGCGTGTCACG-ACCTGGACCACTTCGTGGAGGCGGCCAAAGTCGTACTCGC 724635 Query 62919 C-CATCTATTACAAACAT--GTTCAATG---CAACAGATGCCAGATTACACACGGCTACC 62972 | | | | | ||||| || | | |||| ||||||||||| || || || ||| Sbjct 724634 CTCGACCAGAATCAACATAAGTGGGAAGAGCCAAC-GATGCCAGATTGCAAACTGCGACC 724576 Query 62973 TCATTAGCATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCC 63031 |||| | | ||| |||| | ||||||||||| ||||| | |||||| || Sbjct 724575 TCATCTGG-TGCGCTGTATTCAACAATCTCAGTGCAGAGATTGGAGCTTCGGATAGTCCC 724517 Query 63032 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACC 63091 | || | || || ||||||||||||||||||||||||||||| ||| | || || || Sbjct 724516 AAGGTTCTTCTGGTTGCTCTTTTTGTTACACGCATCCTTATAAAGCATGTACGGCGTCCC 724457 Query 63092 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATT 63150 ||| || ||||||| || | ||| || | ||||| | || | |||| | | || || Sbjct 724456 AGTCTCTGTCTGAGACTCAAGAATTGCATACCAGA-GTTTCTGGGCCT---TCACAGCTT 724401 Query 63151 T-GTATCTC--CTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAA 63207 | | | | | ||| | |||||| || | | ||||||||||| || | | Sbjct 724400 TCCGACCACGGCCTTCCTTCTCGTATCTCTCGTAAAGTGCCTCGAACTCGTCACCATACA 724341 Query 63208 CATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA 63267 ||| ||| | ||| || | || || | | | ||| || | | || | Sbjct 724340 CATCTGCCAGGCCTGGAGCCTCGTGAGGGCAGAAGAGAGTCCAGTCAAGATTCTTCTCGA 724281 Query 63268 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTTGTTCTATGT 63326 | |||||||| || || || || |||| ||||| ||| || ||||||| | | | Sbjct 724280 CACGTTTCATGAATAGGTCTGGGGTCCAGAGAGC-ATAGAAGAGATCTCGGGCCCGGCTT 724222 Query 63327 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63386 ||||| || || |||||| ||| || | || | | | || | |||||| || Sbjct 724221 TCCTCCTTGCCGTGATTCTTGCGAAGGTCCAAAAAGTCAAAGACGTCGGCATGCCATGGC 724162 Query 63387 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63446 || | ||||| || | | || || || ||||| || || ||||| | || | |||| Sbjct 724161 TCAAGATATATAGCGAAGGCACCCGGACGCTTGTTGCCGCCTTGATCGACATAACGAGCG 724102 Query 63447 GTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAG 63506 ||||| || | || | ||||| ||| | | ||||| ||| ||||| || || Sbjct 724101 GTGTTGTTGAAGACGCGTAACATAGGAGTCAATCCGTTGGATGACCCATTTGTGCCACCA 724042 Query 63507 ATATAGCCTCCACTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTT 63565 || ||| ||| | || ||||| | | | | | || || || || || || | || Sbjct 724041 ATGTAGGAACCAGTAGCGCGAAT-GCAGTGAACGTTGAGCCCAATACCTCCAGCGTTCTT 723983 Query 63566 AGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCAT 63625 ||||| | || || ||| | ||||| ||||||||||| || || || || |||| Sbjct 723982 GGAGATCATGGCACAGATTTTGAGAGTGTCGTAGATGCCTTCAATACTGTCCTCTTTCAT 723923 Query 63626 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGG 63685 | | || || ||| | || || | | || || || || || | ||||| Sbjct 723922 ATCGATGAGGAAGCAGGACGCCAACTGTCCTTGCGGTGTACCAGCGTTGAACAGCGTAGG 723863 Query 63686 AGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTAT 63745 |||||| || || || | |||| || | || ||||| || ||||| || || || Sbjct 723862 AGAAGCATGTGTGAAGAACTTTTGGGACATGAGGTTGTAAGTTTCAATCGCCCTCTCGAT 723803 Query 63746 ATC----CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63801 || |||| |||| || || | |||||||| | |||||| || ||||| ||| Sbjct 723802 GTCGTCGCCATGGATG----CCCACAGAAACACGCATAAGCATGTGTTGGGGTCTCTCAG 723747 Query 63802 CAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63861 | | || || || || | | || || |||||||||||| || || ||||| | Sbjct 723746 CTACTTGTTTACCAATCTTGAGGAGATATGAACGTTCCAAAGTTTTGAAGCCGAAATATT 723687 Query 63862 TGTA--TGAAA 63870 ||| ||||| Sbjct 723686 GGTAATTGAAA 723676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817285091200