Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq9 248 1e-60 seq18 178 2e-39 >seq9 Length=1292822 Score = 248 bits (274), Expect = 1e-60 Identities = 571/852 (67%), Gaps = 16/852 (2%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 ||||| || |||||||| || || ||||| || || ||||| || | | || ||||| Sbjct 487334 TTTTGATAGTCACCCACGCGCTTCTCGAAGAAGTTGGTTTTGCCAGCAAGAGAGATATTG 487275 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 |||||||| ||||| ||||| ||||||| |||| || || || | || || Sbjct 487274 TCCATGAAGTCGAAGGGATTCGTAACATTGTAAAACTTGTTGTTGCCAAGAGCAACAAGT 487215 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 | | ||| || |||||||| || ||| ||||||| | ||||| || | | | Sbjct 487214 AGACGATCAGCAACAAATTCAATGTATTGCTTCATCAAGGTCGAGTTCATGCCGAGCAAT 487155 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 || ||||| |||| ||||| ||||| || || ||| || || ||||| || Sbjct 487154 GCGCACGGCAGAGCATCAGTGAGAAACTCTTGCTCGATCACGACTGCCTCGGTTATGATG 487095 Query 36107 GATATTACTGTTTC--TTCAC--TCGGTGGATACAATAAATGTTTAAACATCAAACATGC 36162 | ||| | | || | || |||| | || || |||| | || || Sbjct 487094 TCTTCTACCGCCTGCTTTGATGGTCTGTGGTT----TAGGTGGGAGAACAAGAGGCAGGC 487039 Query 36163 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 36222 ||||| || ||||||||||| | | || | || || || || ||||| || || Sbjct 487038 AAAATCTGTATGCAGACCCTCGTCACGAGAGATCAGCTCATTCGAGAAGGTGAGACCTGG 486979 Query 36223 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 36282 ||| ||||||||||| || |||||||| | || || || || ||||||||||| ||||| Sbjct 486978 CATCAGGCCACGCTTCTTGAGCCAAAAGACAGATGCGAAGGAGCCAGAAAAGAAGATTCC 486919 Query 36283 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA-CCGGCAC--TGTCATGTATCCA 36339 || || || || ||||||| ||| | | || || || | | |||| ||||| Sbjct 486918 CTCGACGGCTGCGAAGGCAACAAGGCGTTGAGCAAAAGTCGACTCCTTGTCCGAAATCCA 486859 Query 36340 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399 ||||||| | ||| || ||| | ||||| || || || || || | || || Sbjct 486858 TCGAAGAGCCCAGTTGGCTTTTTTTCGGATGCAAGGAATGGTGTCAATGGCGTCGAACAG 486799 Query 36400 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 36459 || | | ||| || || || | || || |||||||| | ||| ||||| ||||| Sbjct 486798 GTATTGTCTTTGTTTTGGCTCCTTGATGTACGTGTCAATCAACAAACTGTACATCTCCGA 486739 Query 36460 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 36519 |||||||| || || |||||||| || ||||| || | |||||||| || || || Sbjct 486738 GTGAATGTTCTCCATCATGATTTGAAAGCCATAGAAGCACCGAGCCTCGGGTATTTGGAC 486679 Query 36520 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 36579 ||| |||||||||| | | ||||||||| || || || |||||||| ||||| || Sbjct 486678 TTCGCCTGAAAATCGTTCGACGAGATTTTCATTGACAATGCCATCACTGGCAGCAAAGAA 486619 Query 36580 CGCCAATACATGTTTTATAAAATATTTTTCGT-TTGGTGTTA---GTTTATTCCAATCAT 36635 || | || || | || ||| |||||| | || ||| ||| | |||| |||| Sbjct 486618 GGCAAGGACGTGGGAGACGAAGTATCTTTCGTCATCGT-TTAGACGTTCACTCCAGTCAT 486560 Query 36636 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 36695 |||||| || | || |||||||| ||||||| || || || || || || |||| Sbjct 486559 GTTGATCTTTTGACAGGTCGACTTCTTCTGCTGTCCAGAAAGAAGCTTCGGCTTTCTTAT 486500 Query 36696 ACATATTCCAGA 36707 |||| | ||||| Sbjct 486499 ACATCTGCCAGA 486488 >seq18 Length=894979 Score = 178 bits (196), Expect = 2e-39 Identities = 1199/1905 (63%), Gaps = 61/1905 (3%) Strand=Plus/Minus Query 64827 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 64886 |||| ||||| |||||| || ||||| || || |||| | ||||| || ||||||||| Sbjct 725523 TCCTGGTCCACTGTGAACTGGATGGGTGCAGAGGCGGCCATGGTACGCAGGTAGTACATT 725464 Query 64887 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 64946 ||||| || | || || |||| || ||||||||| || | ||| | Sbjct 725463 CCCGTCTTCAAGCCAAGTTTCCACCCAGCAAAATGCATGGAGGTGATCTTGCCCATGGTA 725404 Query 64947 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 65006 || || | ||| ||||| | ||| || ||| || ||||| || |||| || ||| Sbjct 725403 GGCTCCTTGAGATGAATATTTAGAGACTGGGATTGGTCAATGAATGCACCCCGATCAGCA 725344 Query 65007 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 65066 ||||| | | || || ||| || ||||||| ||| || || | | || ||| Sbjct 725343 GCCATCTGCACAATAGTTCGTTGGCTGATCTCCCAAACAGTCTTGTACAATGCTTTGATA 725284 Query 65067 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 65123 || | |||| ||| | |||| || | || || ||||| || || || || ||||| Sbjct 725283 TCAGCAGGAATGTTGGGAATATTTTGGACTGAGCCGCCATCAGCAATGATTCTGTTCTTC 725224 Query 65124 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 65183 || | || ||| | || | | || | | || ||||| || || Sbjct 725223 ATGTTGTCGGACCAGAGACCCAGATCAACAAGATCTTTCAACAGCCATGGATTGACGACC 725164 Query 65184 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 65243 || |||||||||| || || | |||| ||| ||||| |||||| || || | | || Sbjct 725163 TGGAATTCTCCAGCCAGGACGCGACGAGAGTAGATATTCGAGGTATATGGCTCGAAACAC 725104 Query 65244 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 65303 || || |||||||| || || | || ||||| ||||||||||| ||||| | | | Sbjct 725103 TCGTTGTTTCCCAAGATCTGGGAGGTGGATGCTGTCGGCATAGGCGCCACAAGGAGAGAG 725044 Query 65304 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCGA 65362 || | || ||| | | ||| | | | || | || | |||||| ||| | |||||| Sbjct 725043 TTGCGAACACCATGCTTGGCGATGTCAGCCTTCA-AGCTGGCCCAATCCCACAAATCCGA 724985 Query 65363 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTA 65418 |||| || || || || || ||||| | || || || Sbjct 724984 CGGTGTGACGCCCCACATGTCGTACTGAAGCTCGCCTTTCGAGACTGGAGAACCCTCGTA 724925 Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 | || || |||| ||| || | || || ||||| || | ||| || | Sbjct 724924 C----GTCTCATATGTTCCGAGCTCTTTGGCAAGCTCACAGGAGGCAGTGAGTGCGCCAT 724869 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 65538 ||| || ||||| || |||| | ||||| | ||||||| | ||| ||||| Sbjct 724868 GATAGATCGTTTCAAATATCTGGGTGTTTAGTTGACGTGCTTCAGGAGAATCGAATGGCA 724809 Query 65539 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 | || || ||| || ||||| | || |||||||||| ||| ||||||||||||| Sbjct 724808 GACGCAATGCAAGAAAGGCATCTGCAAGACCCTGAACACCAAGACCAATAGGTCTATGTC 724749 Query 65599 TCTTATTAGAGATTTCAGCTT-----CTGGAATAGGATAATAATTAATATCTATAATTTT 65653 ||| ||| || | || || | ||||||| | || || | | | Sbjct 724748 GGAAATTGC----TTCGGCGTGCCTCCTCGACT-GGATAATGGCTGCGTTCGATGACTCT 724694 Query 65654 ATTGAGATTTC-TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-TCGC 65711 || || || | || || || | |||||| || | || | ||| || | |||| Sbjct 724693 GTTCAGGTTGCGTGTCACG-ACCTGGACCACTTCGTGGAGGCGGCCAAAGTCGTACTCGC 724635 Query 65712 -TCATCTATTACAAACAT--GTTCAATG---CAACAGATGCCAGATTACAAACGGCTACC 65765 || | | | ||||| || | | |||| ||||||||||| ||||| || ||| Sbjct 724634 CTCGACCAGAATCAACATAAGTGGGAAGAGCCAAC-GATGCCAGATTGCAAACTGCGACC 724576 Query 65766 TCATTAGCATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCC 65824 |||| | | ||| |||| | ||||||||||| ||||| | ||| || || Sbjct 724575 TCATCTGG-TGCGCTGTATTCAACAATCTCAGTGCAGAGATTGGAGCTTCGGATAGTCCC 724517 Query 65825 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACC 65884 | || | || || ||||||||||||||||||||||||||||| ||| | || || || Sbjct 724516 AAGGTTCTTCTGGTTGCTCTTTTTGTTACACGCATCCTTATAAAGCATGTACGGCGTCCC 724457 Query 65885 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATT 65943 ||| || ||||||| || | ||| || | ||||| | || | |||| | | || || Sbjct 724456 AGTCTCTGTCTGAGACTCAAGAATTGCATACCAGA-GTTTCTGGGCCT---TCACAGCTT 724401 Query 65944 T-GTATCTC--TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAA 66000 | | | | ||| | |||||| || | | ||||||||||| || | | Sbjct 724400 TCCGACCACGGCCTTCCTTCTCGTATCTCTCGTAAAGTGCCTCGAACTCGTCACCATACA 724341 Query 66001 CATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA 66060 ||| ||| || ||| || | || || | | | ||| || | | || | Sbjct 724340 CATCTGCCAGGCCTGGAGCCTCGTGAGGGCAGAAGAGAGTCCAGTCAAGATTCTTCTCGA 724281 Query 66061 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGT 66119 | |||||||| || || || || |||| ||||| ||| || | ||||| || | | Sbjct 724280 CACGTTTCATGAATAGGTCTGGGGTCCAGAGAGC-ATAGAAGAGATCTCGGGCCCGGCTT 724222 Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 ||||| || || |||||| ||| || | || | | | || |||||| || Sbjct 724221 TCCTCCTTGCCGTGATTCTTGCGAAGGTCCAAAAAGTCAAAGACGTCGGCATGCCATGGC 724162 Query 66180 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 66239 || | ||||| || | | || || || ||||| || || ||||| | || | |||| Sbjct 724161 TCAAGATATATAGCGAAGGCACCCGGACGCTTGTTGCCGCCTTGATCGACATAACGAGCG 724102 Query 66240 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAG 66299 ||||| || | || | ||||| ||| | | || ||||||| ||||| || || Sbjct 724101 GTGTTGTTGAAGACGCGTAACATAGGAGTCAATCCGTTGGATGACCCATTTGTGCCACCA 724042 Query 66300 ATATAGCTTCCACTTGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTT 66358 || ||| ||| | || ||||| | | | | | || || || || || || | || Sbjct 724041 ATGTAGGAACCAGTAGCGCGAAT-GCAGTGAACGTTGAGCCCAATACCTCCAGCGTTCTT 723983 Query 66359 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 66418 ||||| | || || ||| | || || |||||||| || ||||| || || |||| Sbjct 723982 GGAGATCATGGCACAGATTTTGAGAGTGTCGTAGATGCCTTCAATACTGTCCTCTTTCAT 723923 Query 66419 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGG 66478 | | || || ||| | || || | || || || || || | ||||| Sbjct 723922 ATCGATGAGGAAGCAGGACGCCAACTGTCCTTGCGGTGTACCAGCGTTGAACAGCGTAGG 723863 Query 66479 AGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTAT 66538 |||||| || || || | |||| || | || ||||| || ||||| || || || Sbjct 723862 AGAAGCATGTGTGAAGAACTTTTGGGACATGAGGTTGTAAGTTTCAATCGCCCTCTCGAT 723803 Query 66539 ATC----CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 66594 || |||| |||| || || | |||||||| | |||||| || ||||| ||| Sbjct 723802 GTCGTCGCCATGGATG----CCCACAGAAACACGCATAAGCATGTGTTGGGGTCTCTCAG 723747 Query 66595 CGATCTTG-TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 66653 | | |||| || || || | | || || |||||||||||| || || ||||| Sbjct 723746 CTA-CTTGTTTACCAATCTTGAGGAGATATGAACGTTCCAAAGTTTTGAAGCCGAAATAT 723688 Query 66654 TTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 66696 | ||| ||||| |||| || || | ||| | ||||| |||| Sbjct 723687 TGGTAATTGAAA--TCTCTGTCATAGACGATAGCAGAGTTCAGTT 723645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172470913600