Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq9 102 8e-17 >seq9 Length=1292822 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | | || ||| | || | ||||| ||||| |||||||| || ||| Sbjct 436672 GCCACCTCGCAGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGA 436731 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || ||||| || || ||||| || || || |||||| || |||||||| ||||| Sbjct 436732 CAGTGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAGG 436791 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| || || ||| || || | | || | ||||||| | || || Sbjct 436792 AATGCCTTCCTTATCCTGGATCTTGCTCTTCACATTATCGATGGTGTCGGACGATTCAAC 436851 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | |||||||||||||| || || ||||| ||||||||| Sbjct 436852 TTCTAAGGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATTTGCATA 436900 Score = 87.8 bits (96), Expect = 2e-12 Identities = 157/225 (70%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| ||||| ||||| || ||||| || ||| Sbjct 436901 CCACCACGAAGACGGAGGACGAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGG-- 436958 Query 139598 ATTGTGCTCGAG--TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || | | ||| |||||||| ||||||||||| |||| || ||||||||||| || | Sbjct 436959 ATAGGGTTCGGCCATCTTCGAGTTGTTTACCAGCGAAGATAAGTCGTTGCTGATCCGGGG 437018 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 | || || || ||||| ||| |||| | |||| | || | ||||| | | ||| Sbjct 437019 GAATACCCTCCTTGTC-CTGAATTTTGCTCTTTACATTGTCGATAGTGTCAGACGACTCG 437077 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATT 139759 ||||| | || | ||||| || |||| || || |||| |||| Sbjct 437078 ACCTCCAGAGTGATGGTCTTCCCAGTCAGAGTCTTGACGACTATT 437122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063751968000