Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq9 257 2e-63 seq18 194 2e-44 >seq9 Length=1292822 Score = 257 bits (284), Expect = 2e-63 Identities = 568/848 (67%), Gaps = 8/848 (1%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 ||||| || |||||||| || || ||||| || || ||||| || | | || ||||| Sbjct 487334 TTTTGATAGTCACCCACGCGCTTCTCGAAGAAGTTGGTTTTGCCAGCAAGAGAGATATTG 487275 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 |||||||| || || ||||| |||||||| |||| || || || | || || Sbjct 487274 TCCATGAAGTCGAAGGGATTCGTAACATTGTAAAACTTGTTGTTGCCAAGAGCAACAAGT 487215 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 | | ||| || |||||||| || ||| ||||||| | ||||| || | | | Sbjct 487214 AGACGATCAGCAACAAATTCAATGTATTGCTTCATCAAGGTCGAGTTCATGCCGAGCAAT 487155 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 || ||||| |||| ||||| ||||| || || || || || ||||| || Sbjct 487154 GCGCACGGCAGAGCATCAGTGAGAAACTCTTGCTCGATCACGACTGCCTCGGTTATGATG 487095 Query 49909 GAT-CTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAA 49967 | ||| || | ||| | ||| || || || |||| | || || || Sbjct 487094 TCTTCTACCGCCTGCTTTGAT-GGTCTGTGGTTTAGGTGGGAGAACAAGAGGCAGGCAAA 487036 Query 49968 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCAT 50027 ||| |||||||||||||| | | || || || || || || ||||| || ||||| Sbjct 487035 ATCTGTATGCAGACCCTCGTCACGAGAGATCAGCTCATTCGAGAAGGTGAGACCTGGCAT 486976 Query 50028 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTC 50087 ||||||||||| || |||||||| | || || || || ||||||||||||||||| || Sbjct 486975 CAGGCCACGCTTCTTGAGCCAAAAGACAGATGCGAAGGAGCCAGAAAAGAAGATTCCCTC 486916 Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCACTT 50144 || || || ||||||||||| | | || || | | | |||| ||||| Sbjct 486915 GACGGCTGCGAAGGCAACAAGGCGTTGAGCAAAAGTCGACTCCTTGTCCGAAATCCATCG 486856 Query 50145 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 50204 ||||||| | ||| || ||| | ||||| || || || ||||| | || || || Sbjct 486855 AAGAGCCCAGTTGGCTTTTTTTCGGATGCAAGGAATGGTGTCAATGGCGTCGAACAGGTA 486796 Query 50205 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 50264 | | ||| || || || | || || || ||||| | ||| ||||| ||||| || Sbjct 486795 TTGTCTTTGTTTTGGCTCCTTGATGTACGTGTCAATCAACAAACTGTACATCTCCGAGTG 486736 Query 50265 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324 |||||| || || || ||||| || ||||| || | |||||||| || || ||||| Sbjct 486735 AATGTTCTCCATCATGATTTGAAAGCCATAGAAGCACCGAGCCTCGGGTATTTGGACTTC 486676 Query 50325 TGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 50384 |||||||||| | | ||||||||| || || || |||||||| ||||| || || Sbjct 486675 GCCTGAAAATCGTTCGACGAGATTTTCATTGACAATGCCATCACTGGCAGCAAAGAAGGC 486616 Query 50385 CAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCAATCATTGAT 50441 | || || | || | | |||||| ||| ||| | |||| |||| Sbjct 486615 AAGGACGTGGGAGACGAAGTATCTTTCGTCATCGTTTAGACGTTCACTCCAGTCATGTTG 486556 Query 50442 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501 |||||| || | || |||||||| ||||||| || || || || || || |||||||| Sbjct 486555 ATCTTTTGACAGGTCGACTTCTTCTGCTGTCCAGAAAGAAGCTTCGGCTTTCTTATACAT 486496 Query 50502 ATTCCAGA 50509 | ||||| Sbjct 486495 CTGCCAGA 486488 >seq18 Length=894979 Score = 194 bits (214), Expect = 2e-44 Identities = 1208/1907 (63%), Gaps = 65/1907 (3%) Strand=Plus/Minus Query 78706 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 78765 |||| ||||| |||||| || ||||| || || |||| | ||||| || ||||||||| Sbjct 725523 TCCTGGTCCACTGTGAACTGGATGGGTGCAGAGGCGGCCATGGTACGCAGGTAGTACATT 725464 Query 78766 CCCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTC 78825 ||||| || | || || |||| || |||||||| || | ||| | Sbjct 725463 CCCGTCTTCAAGCCAAGTTTCCACCCAGCAAAATGCATGGAGGTGATCTTGCCCATGGTA 725404 Query 78826 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 78885 || || | ||| ||||| | ||| || ||| || ||||| || |||| || ||| Sbjct 725403 GGCTCCTTGAGATGAATATTTAGAGACTGGGATTGGTCAATGAATGCACCCCGATCAGCA 725344 Query 78886 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 78945 ||||| | | || || ||| || ||||||| ||| || || | | || ||| Sbjct 725343 GCCATCTGCACAATAGTTCGTTGGCTGATCTCCCAAACAGTCTTGTACAATGCTTTGATA 725284 Query 78946 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 79002 || | |||| ||| | |||| || | || || ||||| || || || || ||||| Sbjct 725283 TCAGCAGGAATGTTGGGAATATTTTGGACTGAGCCGCCATCAGCAATGATTCTGTTCTTC 725224 Query 79003 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 79062 || | || ||| | || | | || | | || ||||| || || Sbjct 725223 ATGTTGTCGGACCAGAGACCCAGATCAACAAGATCTTTCAACAGCCATGGATTGACGACC 725164 Query 79063 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGAT 79122 || |||||||||| || || | |||| ||| ||||| ||||||||| || | | Sbjct 725163 TGGAATTCTCCAGCCAGGACGCGACGAGAGTAGATATTCGAGGTATATGGCTCGAAACAC 725104 Query 79123 TCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTA 79182 || || |||||||| || || | || ||||| || |||||||| ||||| | | | Sbjct 725103 TCGTTGTTTCCCAAGATCTGGGAGGTGGATGCTGTCGGCATAGGCGCCACAAGGAGAGAG 725044 Query 79183 TTTCTAAGACCGTATGATCTG--ATTTTATCTTTTAGAGATT-CCCAATCCCAAAGATCA 79239 || | || ||| ||| | | || | | | || | || | |||||||||| | ||| Sbjct 725043 TTGCGAACACC--ATGCTTGGCGATGTCAGCCTTCA-AGCTGGCCCAATCCCACAAATCC 724987 Query 79240 GACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTAT-GATCCTGT 79298 ||||| || ||| | || || || || || || | || | || || Sbjct 724986 GACGGTGTGACGCCCCACATGTCGTACTGAAGCTCGCCTTT-CGAGACTGGAGAACCCTC 724928 Query 79299 GTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTA 79358 ||| || ||||| | ||| || || ||| | ||||| || | ||| || | Sbjct 724927 GTACGTCTCATATGTTCCGAGCTCTTTGGCAAGCTCACAGGAGGCAGTGAGTGCGCCATG 724868 Query 79359 ATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATA 79418 ||| || ||||| || |||| | || || | ||||||| | ||| ||||| Sbjct 724867 ATAGATCGTTTCAAATATCTGGGTGTTTAGTTGACGTGCTTCAGGAGAATCGAATGGCAG 724808 Query 79419 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 79478 | || || ||| || ||||| | || |||||||||| ||| ||||||||||||| Sbjct 724807 ACGCAATGCAAGAAAGGCATCTGCAAGACCCTGAACACCAAGACCAATAGGTCTATGTCG 724748 Query 79479 CTTATTAGAAATT---TCAGCTT-----CTGGAATAGGATAATAATTAATATCTATAATT 79530 |||||| || || | || || | ||||||| | || || | | Sbjct 724747 -------GAAATTGCTTCGGCGTGCCTCCTCGACT-GGATAATGGCTGCGTTCGATGACT 724696 Query 79531 TTATTGAGATTCC-TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA-TC 79588 | || || || | || | | || | |||||| || | || | ||| || | || Sbjct 724695 CTGTTCAGGTTGCGTGTC-ACGACCTGGACCACTTCGTGGAGGCGGCCAAAGTCGTACTC 724637 Query 79589 GTC-CATCTATTACAAACAT--GTTCAACGCGACA--GATGCCAGATTACAAACGGCTAC 79643 | | | | | | ||||| || | | | || ||||||||||| ||||| || || Sbjct 724636 GCCTCGACCAGAATCAACATAAGTGGGAAGAGCCAACGATGCCAGATTGCAAACTGCGAC 724577 Query 79644 CTCATTAGCATCCGCA-TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTC 79702 ||||| | | ||| |||| | || ||||||||||| || | || || | Sbjct 724576 CTCATCTGG-TGCGCTGTATTCAACAATCTCAGTGCAGAGATTGGAGCTTCGGATAGTCC 724518 Query 79703 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTAC 79762 | | || | || || ||||||||||||||||||||||||||||| ||| |||| || | Sbjct 724517 CAAGGTTCTTCTGGTTGCTCTTTTTGTTACACGCATCCTTATAAAGCATGTACGGCGTCC 724458 Query 79763 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA----TTAT 79817 |||| || ||||||| || | ||| || | ||||| | || | ||||| | || Sbjct 724457 CAGTCTCTGTCTGAGACTCAAGAATTGCATACCAGA-GTTTCTGGGCCTTCACAGCTTTC 724399 Query 79818 AGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCA 79877 ||| | | || || | |||||| || | | ||||||||||| || | Sbjct 724398 CGAC---CACGGCCTTCCT-TCTCGTATCTCTCGTAAAGTGCCTCGAACTCGTCACCATA 724343 Query 79878 AACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTT 79937 ||||| | | || ||| |||| ||| || | | | ||| || || | || Sbjct 724342 CACATCTGCCAGGCCTGGAGCCTCGTGAGGGCAGAAGAGAGTCCAGTCAAGATTCTTCTC 724283 Query 79938 TACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTAT 79996 || |||||||| || || || || |||| ||||| ||| || ||||||| || | Sbjct 724282 GACACGTTTCATGAATAGGTCTGGGGTCCAGAGAGC-ATAGAAGAGATCTCGGGCCCGGC 724224 Query 79997 GCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 80056 ||||| || || |||||| ||| || | || | | | || | |||||| | Sbjct 724223 TTTCCTCCTTGCCGTGATTCTTGCGAAGGTCCAAAAAGTCAAAGACGTCGGCATGCCATG 724164 Query 80057 GTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAG 80116 | || | ||||| || | | ||||| || ||||| || || ||||| | || | || Sbjct 724163 GCTCAAGATATATAGCGAAGGCACCCGGACGCTTGTTGCCGCCTTGATCGACATAACGAG 724104 Query 80117 CGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGG 80176 ||||||| || | || | ||||| ||| | | || ||||||| ||||| || || Sbjct 724103 CGGTGTTGTTGAAGACGCGTAACATAGGAGTCAATCCGTTGGATGACCCATTTGTGCCAC 724044 Query 80177 AGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATT 80235 || ||| ||| | || ||||| | | | | | || || || || || || | Sbjct 724043 CAATGTAGGAACCAGTAGCGCGAAT-GCAGTGAACGTTGAGCCCAATACCTCCAGCGTTC 723985 Query 80236 TTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATC 80295 || ||||| | || || ||| | || || |||||||| || || || || || || Sbjct 723984 TTGGAGATCATGGCACAGATTTTGAGAGTGTCGTAGATGCCTTCAATACTGTCCTCTTTC 723925 Query 80296 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTA 80355 || | | || || ||| | || || | || || || || || | ||| Sbjct 723924 ATATCGATGAGGAAGCAGGACGCCAACTGTCCTTGCGGTGTACCAGCGTTGAACAGCGTA 723865 Query 80356 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 80415 |||||||| || || || | |||| |||| || ||||| || ||||| || || Sbjct 723864 GGAGAAGCATGTGTGAAGAACTTTTGGGACATGAGGTTGTAAGTTTCAATCGCCCTCTCG 723805 Query 80416 ATATC----CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTC 80471 || || |||| |||| || || | |||||||| | |||||| || ||||| || Sbjct 723804 ATGTCGTCGCCATGGATG----CCCACAGAAACACGCATAAGCATGTGTTGGGGTCTCTC 723749 Query 80472 AACGATCTTG-TTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAAT 80530 | | | |||| ||| || || | | || || |||||||||||| || || |||| Sbjct 723748 AGCTA-CTTGTTTACCAATCTTGAGGAGATATGAACGTTCCAAAGTTTTGAAGCCGAAAT 723690 Query 80531 AGTTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 80575 | | ||| ||||| |||| || || | ||| | ||||| |||| Sbjct 723689 ATTGGTAATTGAAA--TCTCTGTCATAGACGATAGCAGAGTTCAGTT 723645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268440865600