Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq9 223 5e-53 seq18 172 7e-38 >seq9 Length=1292822 Score = 223 bits (246), Expect = 5e-53 Identities = 563/851 (66%), Gaps = 14/851 (2%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 ||||| || |||||||| || || ||||| || || || || || | | || ||||| Sbjct 487334 TTTTGATAGTCACCCACGCGCTTCTCGAAGAAGTTGGTTTTGCCAGCAAGAGAGATATTG 487275 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 |||||||| || || ||||| |||||||| |||| || || || | || || Sbjct 487274 TCCATGAAGTCGAAGGGATTCGTAACATTGTAAAACTTGTTGTTGCCAAGAGCAACAAGT 487215 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 | | ||| || | ||||| || ||| ||||||| | ||||| || | | | Sbjct 487214 AGACGATCAGCAACAAATTCAATGTATTGCTTCATCAAGGTCGAGTTCATGCCGAGCAAT 487155 Query 41954 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 42013 || ||||| |||| ||||| ||||| || || ||| || || ||||| || Sbjct 487154 GCGCACGGCAGAGCATCAGTGAGAAACTCTTGCTCGATCACGACTGCCTCGGTTATGATG 487095 Query 42014 GATCTTACTGTTTC--TTCAC--TCGGTGGATACAATAAATGTTTAAACATCAAACATGC 42069 | ||| | | || | || |||| | || || |||| | || || Sbjct 487094 TCTTCTACCGCCTGCTTTGATGGTCTGTGGTT----TAGGTGGGAGAACAAGAGGCAGGC 487039 Query 42070 GAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 42129 ||||| ||||||||||| || | | || | || || || || ||||| || || Sbjct 487038 AAAATCTGTATGCAGACCCTCGTCACGAGAGATCAGCTCATTCGAGAAGGTGAGACCTGG 486979 Query 42130 CATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCC 42189 ||| ||||||||||| || |||||||| | ||| || || || ||||||||||||||||| Sbjct 486978 CATCAGGCCACGCTTCTTGAGCCAAAAGACAGATGCGAAGGAGCCAGAAAAGAAGATTCC 486919 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA-CCGGCAC--TGTCATGTATCCA 42246 || || || || ||||||| ||| | | || || || | | |||| ||||| Sbjct 486918 CTCGACGGCTGCGAAGGCAACAAGGCGTTGAGCAAAAGTCGACTCCTTGTCCGAAATCCA 486859 Query 42247 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 42306 ||||||| | ||| || ||| | ||||| || || || ||||| | || || Sbjct 486858 TCGAAGAGCCCAGTTGGCTTTTTTTCGGATGCAAGGAATGGTGTCAATGGCGTCGAACAG 486799 Query 42307 ATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGA 42366 || | | ||| || || || | || || || ||||| | ||| ||||| || || Sbjct 486798 GTATTGTCTTTGTTTTGGCTCCTTGATGTACGTGTCAATCAACAAACTGTACATCTCCGA 486739 Query 42367 ATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTAC 42426 |||||||| || || || ||||| || ||||| || | ||||||| | || || Sbjct 486738 GTGAATGTTCTCCATCATGATTTGAAAGCCATAGAAGCACCGAGCCTCGGGTATTTGGAC 486679 Query 42427 TTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAA 42486 ||| |||||||||| | | |||||| || || || || |||||||| ||||| || Sbjct 486678 TTCGCCTGAAAATCGTTCGACGAGATTTTCATTGACAATGCCATCACTGGCAGCAAAGAA 486619 Query 42487 CGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTATTCCAATCATT 42543 || | || || | || ||| ||||||| ||| || | |||| |||| Sbjct 486618 GGCAAGGACGTGGGAGACGAAGTATCTTTCGTCATCGTTTAGACGTTCACTCCAGTCATG 486559 Query 42544 GATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATA 42603 |||||| || | || ||||||||| | ||||| || || ||||| || || ||||| Sbjct 486558 TTGATCTTTTGACAGGTCGACTTCTTCTGCTGTCCAGAAAGAAGCTTCGGCTTTCTTATA 486499 Query 42604 CATATTCCAGA 42614 ||| | ||||| Sbjct 486498 CATCTGCCAGA 486488 >seq18 Length=894979 Score = 172 bits (190), Expect = 7e-38 Identities = 1190/1903 (63%), Gaps = 57/1903 (3%) Strand=Plus/Minus Query 70789 TCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATG 70848 |||| ||||| ||| ||||| ||||| | || ||||| | ||||| || |||||||| Sbjct 725523 TCCTGGTCCACTGTGAACTGGATGGGTGCAGAGGCGGCCATGGTACGCAGGTAGTACATT 725464 Query 70849 CCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTA 70908 || || || | || || |||| || ||||||||| || | ||| | || Sbjct 725463 CCCGTCTTCAAGCCAAGTTTCCACCCAGCAAAATGCATGGAGGTGATCTTGCCCATGGTA 725404 Query 70909 GGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 70968 || || | |||||||| | ||||| ||| || ||||| || |||| || ||| Sbjct 725403 GGCTCCTTGAGATGAATATTTAGAGACTGGGATTGGTCAATGAATGCACCCCGATCAGCA 725344 Query 70969 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 71028 ||||| | | || || ||| || ||||||| ||| || || | | || ||| Sbjct 725343 GCCATCTGCACAATAGTTCGTTGGCTGATCTCCCAAACAGTCTTGTACAATGCTTTGATA 725284 Query 71029 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTG 71085 || | |||| ||| | |||| || | || || ||||| ||||| || || || || Sbjct 725283 TCAGCAGGAATGTTGGGAATATTTTGGACTGAGCCGCCATCAGCAATGATTCTGTTCTTC 725224 Query 71086 ATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACT 71145 || | || ||| | || | | || | | || ||||| || || Sbjct 725223 ATGTTGTCGGACCAGAGACCCAGATCAACAAGATCTTTCAACAGCCATGGATTGACGACC 725164 Query 71146 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGAC 71205 || |||||||||| || || | ||||| ||| ||||| |||||| || || | || Sbjct 725163 TGGAATTCTCCAGCCAGGACGCGACGAGAGTAGATATTCGAGGTATATGGCTCGAAACAC 725104 Query 71206 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTA 71265 || || |||||||| || || | || ||||| ||||||||||| ||||| | ||| Sbjct 725103 TCGTTGTTTCCCAAGATCTGGGAGGTGGATGCTGTCGGCATAGGCGCCACAAGGAGAGAG 725044 Query 71266 TTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATT-CCCAATTCCAAAGATCCGA 71324 || | || |||||| ||| | | | || | || | |||||| ||| | |||||| Sbjct 725043 TTGCGAACACCATGCTTGGCGATGTCAGCCTTCA-AGCTGGCCCAATCCCACAAATCCGA 724985 Query 71325 TGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTAT-GATCCTGCAT 71383 ||| || ||| || | || | || || | | Sbjct 724984 CGGTGTGACGCCCCACATGTCGTACTGAAGCTCGCCTTT-CGAGACTGGAGAACCCTCGT 724926 Query 71384 ATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAAT 71443 | || || |||| ||| | || ||| || ||||| || | ||| |||| || Sbjct 724925 ACGTCTCATATGTTCCGAGCTCTTTGGCAAGCTCACAGGAGGCAGTGAGTGCGCCATGAT 724866 Query 71444 AAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAAT 71503 | || ||||| || |||| | || || | ||||||| || ||| ||||| | Sbjct 724865 AGATCGTTTCAAATATCTGGGTGTTTAGTTGACGTGCTTCAGGAGAATCGAATGGCAGAC 724806 Query 71504 TTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCT 71563 || || ||| || ||||| | || ||||| |||| ||| |||||||| |||| Sbjct 724805 GCAATGCAAGAAAGGCATCTGCAAGACCCTGAACACCAAGACCAATAGGTCTATGTCG-- 724748 Query 71564 TATTAGAAATT---TCAGCTT-----CTGGAATAGGATAATAATTAATATCTATAATTTT 71615 |||||| || || | || || | ||||||| | || || | | | Sbjct 724747 -----GAAATTGCTTCGGCGTGCCTCCTCGACT-GGATAATGGCTGCGTTCGATGACTCT 724694 Query 71616 ATTGAGATTTC-TGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCC 71674 || || || | || | | || | |||||| || | || | ||| || | ||| Sbjct 724693 GTTCAGGTTGCGTGTC-ACGACCTGGACCACTTCGTGGAGGCGGCCAAAGTCGTA-CTCG 724636 Query 71675 CATCTATTACAAACACGTTCA--------AGGCAACAGATGCCAGATTACAAACGGCTAC 71726 | || | | || || | | || |||| ||||||||||| ||||| || || Sbjct 724635 CCTCGACCAGAATCAACATAAGTGGGAAGAGCCAAC-GATGCCAGATTGCAAACTGCGAC 724577 Query 71727 CTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCC 71786 ||||| | || |||| | ||| |||||||| ||||| | ||| || || Sbjct 724576 CTCATCTGGTGCGCTGTATTCAACAATCTCAGTGCAGAGATTGGAGCTTCGGATAGTCCC 724517 Query 71787 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACC 71846 | || | || || ||||||||||||||||||||||||||||| || |||| || || Sbjct 724516 AAGGTTCTTCTGGTTGCTCTTTTTGTTACACGCATCCTTATAAAGCATGTACGGCGTCCC 724457 Query 71847 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATATTCT 71905 ||| || ||||||| || | ||| || | ||||| | || | ||||| | ||| Sbjct 724456 AGTCTCTGTCTGAGACTCAAGAATTGCATACCAGA-GTTTCTGGGCCTTCACAGCTTTCC 724398 Query 71906 TGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCAT 71965 | ||| | |||||| || | | ||||||||||| || | ||| Sbjct 724397 GACCACGGCCTTCCTTCTCGTATCTCTCGTAAAGTGCCTCGAACTCGTCACCATACACAT 724338 Query 71966 TGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTC 72025 | | || ||| || | || || | | | ||| || || | | || | Sbjct 724337 CTGCCAGGCCTGGAGCCTCGTGAGGGCAGAAGAGAGTCCAGTCAAGATTCTTCTCGACAC 724278 Query 72026 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCC 72084 ||||||| || || || || |||| ||||| ||| || ||||||| || | ||| Sbjct 724277 GTTTCATGAATAGGTCTGGGGTCCAGAGAGC-ATAGAAGAGATCTCGGGCCCGGCTTTCC 724219 Query 72085 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 72144 || || || |||||| ||| || | || | | | || | |||||| || || Sbjct 724218 TCCTTGCCGTGATTCTTGCGAAGGTCCAAAAAGTCAAAGACGTCGGCATGCCATGGCTCA 724159 Query 72145 AAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 72204 | ||||| || | | ||||| || ||||| || || ||||| | || | ||||||| Sbjct 724158 AGATATATAGCGAAGGCACCCGGACGCTTGTTGCCGCCTTGATCGACATAACGAGCGGTG 724099 Query 72205 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATA 72264 || || | || | ||||| ||| | | || ||||||| ||||| || || || Sbjct 724098 TTGTTGAAGACGCGTAACATAGGAGTCAATCCGTTGGATGACCCATTTGTGCCACCAATG 724039 Query 72265 TAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAG 72322 ||| ||| | || ||||| | || ||| || || || || || || | || | Sbjct 724038 TAGGAACCAGTAGCGCGAATGCAGTGAACGTTG--AGCCCAATACCTCCAGCGTTCTTGG 723981 Query 72323 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 72382 |||| | || || ||| | || || |||||||| || ||||| || || |||| | Sbjct 723980 AGATCATGGCACAGATTTTGAGAGTGTCGTAGATGCCTTCAATACTGTCCTCTTTCATAT 723921 Query 72383 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 72442 | || || ||| | || || | || || || || || | ||||||| Sbjct 723920 CGATGAGGAAGCAGGACGCCAACTGTCCTTGCGGTGTACCAGCGTTGAACAGCGTAGGAG 723861 Query 72443 AAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATAT 72502 |||| || || || | |||| |||| || ||||| || ||||| || || || | Sbjct 723860 AAGCATGTGTGAAGAACTTTTGGGACATGAGGTTGTAAGTTTCAATCGCCCTCTCGATGT 723801 Query 72503 C----CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACG 72558 | |||| |||| || || | |||||||| | ||| || || ||||| ||| | Sbjct 723800 CGTCGCCATGGATG----CCCACAGAAACACGCATAAGCATGTGTTGGGGTCTCTCAGCT 723745 Query 72559 ATCTTG-TTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 72617 | |||| ||| || || | | || || |||||||||||| || || ||||| | Sbjct 723744 A-CTTGTTTACCAATCTTGAGGAGATATGAACGTTCCAAAGTTTTGAAGCCGAAATATTG 723686 Query 72618 GTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTT 72658 ||| ||||| |||| || || | ||| | || || |||| Sbjct 723685 GTAATTGAAA--TCTCTGTCATAGACGATAGCAGAGTTCAGTT 723645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138864430400