Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq9 194 2e-44 >seq9 Length=1292822 Score = 194 bits (214), Expect = 2e-44 Identities = 559/846 (66%), Gaps = 33/846 (4%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| | ||||| || || || | || || || ||||| | ||||| ||||| ||||| Sbjct 486490 TGGCAGATGTATAAGAAAGCCGAAGCTTCTTTCTGGACAGCAGAAGAAGTCGACCTGTCA 486549 Query 125082 AAGGACCTGTACGATTGG-GAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCA 125140 || || | | || ||| | || ||| | | || || || | || | || || Sbjct 486550 AAAGATCAACATGACTGGAGTGAA-CGTCTAAACGATGACGAAAGATACTTCGTCTCCCA 486608 Query 125141 CATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGAT 125199 | | | ||||||||||| | | ||||| || ||||| || ||||| || || ||||| Sbjct 486609 CGTCCTTGCCTTCTTTGCTGCCAGTGATGGCATTGTCAATGAAAATCTCGTCGA-ACGAT 486667 Query 125200 TCTCTCAAGAGTTGACCA--TTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGAT 125257 | || | | | | ||| | || |||| |||||| || || || ||||||||||| Sbjct 486668 TTTC--AGGCGAAGTCCAAATACCCGAGGCTCGGTGCTTCTATGGCTTTCAAATCATGAT 486725 Query 125258 TGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCA 125317 |||||| | |||||||| |||||| | ||||||||| |||||| || || | Sbjct 486726 GGAGAACATTCACTCGGAGATGTACAGTTTGTTGATTGACACGTACATCAAGGAGCCAAA 486785 Query 125318 ACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCA 125377 || | ||| || || |||| || ||||| | || | || || ||||| || | Sbjct 486786 ACAAAGACAATACCTGTTCGACGCCATTGACACCATTCCTTGCATCCGAAAAAAAGCCAA 486845 Query 125378 ATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATT 125437 |||| |||| ||||| ||| | |||| | | || | | || || || || Sbjct 486846 CTGGGCTCTTCGATGGATTTCGGACAAGGAGTCGACTTTTGCTCAACGCCTTGTTGCCTT 486905 Query 125438 CGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAA 125497 ||| ||||| ||||| ||||||||||| || || || | |||||||||||||||| Sbjct 486906 CGCAGCCGTCGAGGGAATCTTCTTTTCTGGCTCCTTCGCATCTGTCTTTTGGCTCAAGAA 486965 Query 125498 GCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCT 125557 ||| || || ||||| || || || | || ||| | || ||||| |||||||| || Sbjct 486966 GCGTGGCCTGATGCCAGGTCTCACCTTCTCGAATGAGCTGATCTCTCGTGACGAGGGTCT 487025 Query 125558 ACACTGTGACTTTGCCATTCTACTGTT-TCGCAACTATCTGCGTCCCGAGTGCAGATCCA 125616 || || |||||| || |||| || || ||| | |||| ||| Sbjct 487026 GCATACAGATTTTGCCTGCCTCTTGTTCTCCCACCTA----------AACCACAGA-CCA 487074 Query 125617 GCGATG-AAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTA 125675 | | | | ||| |||| ||||||| || || ||| || ||||||||||| Sbjct 487075 TCAAAGCAGGCGGTAGAAGACATCATAACCGAGGCAGTCGTGATCGAGCAAGAGTTTCTC 487134 Query 125676 ACCGAATCCCTACCGGTCAGCA-TGATTGGCATGAACTGCAAGCTAATGTGCGAGTACAT 125734 || || | || || || ||| || | |||||||||| | | ||| | ||||| Sbjct 487135 ACTGATGCTCTGCC-GTGCGCATTGCTCGGCATGAACTCGACCTTGATGAAGCAATACAT 487193 Query 125735 AGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG--ATTGG---CCGCAAGATTTACAAC 125789 || ||||| || ||||||||||| |||| |||| | |||| ||||||| Sbjct 487194 TGAATTTGTTGCTGATCGTCTACT-----TGTTGCTCTTGGCAACAACAAGTTTTACAAT 487248 Query 125790 GCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTC 125849 | | ||||||||| || |||||| || || || || | || || |||||||| ||| Sbjct 487249 GTTACGAATCCCTTCGACTTCATGGACAATATCTCTCTTGCTGGCAAAACCAACTTCTTC 487308 Query 125850 GAGAAG 125855 |||||| Sbjct 487309 GAGAAG 487314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058829470400