Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02]
40 sequences; 37,173,200 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq9 134 3e-26
>seq9
Length=1292822
Score = 134 bits (148), Expect = 3e-26
Identities = 170/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || |||| || || || || ||||||| |||||||||||||||||| || |||||
Sbjct 436670 ATGCCACCTCGCAGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCG 436729
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | ||| || || || || || || || || || | | ||| ||||| |||
Sbjct 436730 GACAGTGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGA 436789
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTC 104508
|| || ||||| |||||||| ||| ||||| || ||||| || | ||| ||| | |||
Sbjct 436790 GGAATGCCTTCCTTATCCTGGATC-TTGCTCTTCACATTATCGATGGTGTCGGACGATTC 436848
Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| |||| || || ||||| || || | ||| || || || || |||||
Sbjct 436849 AACTTCTAAGGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATTTGCAT 436899
Score = 120 bits (132), Expect = 7e-22
Identities = 147/197 (75%), Gaps = 3/197 (2%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|||||||||||||| || || ||||| ||||| |||| || ||||| |||||||| |||
Sbjct 436931 GTAGATTCTTTCTGGATGTTGTAGTCGGATAGGGTTCGGCCATCTTCGAGTTGTTTACCA 436990
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481
|| || || || | || ||||| || || || || || || |||||||| |||||| ||
Sbjct 436991 GCGAAGATAAGTCGTTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAAT-TTTGCTCTT 437049
Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541
|||||| || | || || | || ||||| || || || ||||| ||||| || ||
Sbjct 437050 TACATTGTCGATAGTGTCAGACGACTCGACCTCCAGAGTGATGGTCTTCCCAGTCAGAGT 437109
Query 104542 TTTTACAAATATCTGCA 104558
|| || | ||| ||||
Sbjct 437110 CTTGACGACTAT-TGCA 437125
Score = 107 bits (118), Expect = 4e-18
Identities = 134/181 (74%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421
||| || || ||||| || || ||||| ||||| || | |||||||| || ||||| ||
Sbjct 437212 TGTTGACTCCTTCTGGATGTTGTAGTCGGATAGGGTACGGCCGTCTTCGAGCTGTTTGCC 437271
Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-T 104480
|| || || || | ||| ||||| || || || || || || ||||||||| ||||| |
Sbjct 437272 GGCGAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATC-TTGCTCT 437330
Query 104481 TTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540
| ||||| || | ||||| || | || ||||| || || || ||||| || |||| ||
Sbjct 437331 TCACATTATCGATAGTATCACTGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTAACTG 437390
Query 104541 T 104541
|
Sbjct 437391 T 437391
Score = 102 bits (112), Expect = 2e-16
Identities = 339/517 (66%), Gaps = 14/517 (3%)
Strand=Plus/Plus
Query 268741 GATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGA 268800
|||||| || | |||| |||||||| ||||| | ||||||||| || ||||| | ||
Sbjct 486495 GATGTATAAGAAAGCCGAAGCTTCTTTCTGGACAGCAGAAGAAGTCGACCTGTCAAAAGA 486554
Query 268801 CTTAATA-GATTGGAA--AAATTTAAAACCA-GAAGAAAGAAGATTTATATCTTATATTC 268856
| || | || |||| || | |||| | || |||||| || | || | | |
Sbjct 486555 -TCAACATGACTGGAGTGAACGTCTAAACGATGACGAAAGATACTTCGTCTCCCACGTCC 486613
Query 268857 TTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGA--GAAGTTCTG 268914
|||| || ||||| | |||||||| || || || |||||||| || || || ||| |
Sbjct 486614 TTGCCTTCTTTGCTGCCAGTGATGGCATTGTCAATGAAAATCTCGTCGAACGATTTTCAG 486673
Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974
| || || || || || || || | || || || || || || || || || ||
Sbjct 486674 GC--GAAGTCCAAATACCCGAGGCTCGGTGCTTCTATGGCTTTCAAATCATGATGGAGAA 486731
Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAA 269034
||||| || |||||||||||| | || || || || || || | || ||| |||
Sbjct 486732 CATTCACTCGGAGATGTACAGTTTGTTGATTGACACGTACATCAAGGA-GCCAAAACAAA 486790
Query 269035 GAAAAGA-CTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGG 269093
|| || | || || | || || || || | |||||||| | | ||||
Sbjct 486791 GACAATACCTGTTCGACGCCATTGACACCATTCCTTGCATCCGAAAAAAAGCCAACTGGG 486850
Query 269094 CTCTGAAATGGATAAACGATAGCG---CGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCG 269150
|||| |||||| || | | || ||| | || | | ||||| || || |
Sbjct 486851 CTCTTCGATGGATTTCGGACAAGGAGTCGACTTTTGCTCAACGCCTTGTTGCCTTCGCAG 486910
Query 269151 CTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAG 269210
| || || || || |||||||| || || || || || |||||||| | ||||| | |
Sbjct 486911 CCGTCGAGGGAATCTTCTTTTCTGGCTCCTTCGCATCTGTCTTTTGGCTCAAGAAGCGTG 486970
Query 269211 GCCTTATGCCAGGATTAACTTTCTCTAACGAATTGAT 269247
|||| |||||||| | || ||||| || || ||||
Sbjct 486971 GCCTGATGCCAGGTCTCACCTTCTCGAATGAGCTGAT 487007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151397809908320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |