Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq9 134 3e-26 >seq9 Length=1292822 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || || || || ||||||| |||||||||||||||||| || ||||| Sbjct 436670 ATGCCACCTCGCAGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCG 436729 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| || || || || || || || || || | | ||| ||||| ||| Sbjct 436730 GACAGTGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGA 436789 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||||| |||||||| ||| ||||| || ||||| || | ||| ||| | ||| Sbjct 436790 GGAATGCCTTCCTTATCCTGGATC-TTGCTCTTCACATTATCGATGGTGTCGGACGATTC 436848 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| || || ||||| || || | ||| || || || || ||||| Sbjct 436849 AACTTCTAAGGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATTTGCAT 436899 Score = 120 bits (132), Expect = 7e-22 Identities = 147/197 (75%), Gaps = 3/197 (2%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||||||||| || || ||||| ||||| |||| || ||||| |||||||| ||| Sbjct 436931 GTAGATTCTTTCTGGATGTTGTAGTCGGATAGGGTTCGGCCATCTTCGAGTTGTTTACCA 436990 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 || || || || | || ||||| || || || || || || |||||||| |||||| || Sbjct 436991 GCGAAGATAAGTCGTTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAAT-TTTGCTCTT 437049 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 |||||| || | || || | || ||||| || || || ||||| ||||| || || Sbjct 437050 TACATTGTCGATAGTGTCAGACGACTCGACCTCCAGAGTGATGGTCTTCCCAGTCAGAGT 437109 Query 104542 TTTTACAAATATCTGCA 104558 || || | ||| |||| Sbjct 437110 CTTGACGACTAT-TGCA 437125 Score = 107 bits (118), Expect = 4e-18 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 104362 TGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCC 104421 ||| || || ||||| || || ||||| ||||| || | |||||||| || ||||| || Sbjct 437212 TGTTGACTCCTTCTGGATGTTGTAGTCGGATAGGGTACGGCCGTCTTCGAGCTGTTTGCC 437271 Query 104422 AGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-T 104480 || || || || | ||| ||||| || || || || || || ||||||||| ||||| | Sbjct 437272 GGCGAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATC-TTGCTCT 437330 Query 104481 TTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 | ||||| || | ||||| || | || ||||| || || || ||||| || |||| || Sbjct 437331 TCACATTATCGATAGTATCACTGGACTCGACCTCGAGAGTGATGGTCTTGCCGGTAACTG 437390 Query 104541 T 104541 | Sbjct 437391 T 437391 Score = 102 bits (112), Expect = 2e-16 Identities = 339/517 (66%), Gaps = 14/517 (3%) Strand=Plus/Plus Query 268741 GATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGA 268800 |||||| || | |||| |||||||| ||||| | ||||||||| || ||||| | || Sbjct 486495 GATGTATAAGAAAGCCGAAGCTTCTTTCTGGACAGCAGAAGAAGTCGACCTGTCAAAAGA 486554 Query 268801 CTTAATA-GATTGGAA--AAATTTAAAACCA-GAAGAAAGAAGATTTATATCTTATATTC 268856 | || | || |||| || | |||| | || |||||| || | || | | | Sbjct 486555 -TCAACATGACTGGAGTGAACGTCTAAACGATGACGAAAGATACTTCGTCTCCCACGTCC 486613 Query 268857 TTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGA--GAAGTTCTG 268914 |||| || ||||| | |||||||| || || || |||||||| || || || ||| | Sbjct 486614 TTGCCTTCTTTGCTGCCAGTGATGGCATTGTCAATGAAAATCTCGTCGAACGATTTTCAG 486673 Query 268915 TCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAA 268974 | || || || || || || || | || || || || || || || || || || Sbjct 486674 GC--GAAGTCCAAATACCCGAGGCTCGGTGCTTCTATGGCTTTCAAATCATGATGGAGAA 486731 Query 268975 TATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAA 269034 ||||| || |||||||||||| | || || || || || || | || ||| ||| Sbjct 486732 CATTCACTCGGAGATGTACAGTTTGTTGATTGACACGTACATCAAGGA-GCCAAAACAAA 486790 Query 269035 GAAAAGA-CTATTTTCTTCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGG 269093 || || | || || | || || || || | |||||||| | | |||| Sbjct 486791 GACAATACCTGTTCGACGCCATTGACACCATTCCTTGCATCCGAAAAAAAGCCAACTGGG 486850 Query 269094 CTCTGAAATGGATAAACGATAGCG---CGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCG 269150 |||| |||||| || | | || ||| | || | | ||||| || || | Sbjct 486851 CTCTTCGATGGATTTCGGACAAGGAGTCGACTTTTGCTCAACGCCTTGTTGCCTTCGCAG 486910 Query 269151 CTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAG 269210 | || || || || |||||||| || || || || || |||||||| | ||||| | | Sbjct 486911 CCGTCGAGGGAATCTTCTTTTCTGGCTCCTTCGCATCTGTCTTTTGGCTCAAGAAGCGTG 486970 Query 269211 GCCTTATGCCAGGATTAACTTTCTCTAACGAATTGAT 269247 |||| |||||||| | || ||||| || || |||| Sbjct 486971 GCCTGATGCCAGGTCTCACCTTCTCGAATGAGCTGAT 487007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397809908320