Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq9 87.8 2e-12 seq11 82.4 7e-11 >seq9 Length=1292822 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | || || |||||| | |||||||| || || || | ||||||||| | Sbjct 436445 CCACCACGCAGTCTCAACACGAGATGCAAAGTGCTCTCTTTCTGGATGTTATAATCCGAC 436504 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | ||| || ||| |||| ||| || ||| ||||||| | | || |||||||| | Sbjct 436505 AA--TGTCCGACCATCTTCCAACTGCTTGCCGGCAAAGATGAGGCGCTGTTGATCTGGGG 436562 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 ||||||| |||||||| | || || ||| || ||| || || | | || | Sbjct 436563 GAATACCCTCTTTGTCTTGGATCTTGCTCTTCACATTATCGATTGTATCCGAGCTTTCCA 436622 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | ||||||||||| || || | || || |||||||||||||||| Sbjct 436623 CTTCGAGTGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCATGC 436673 >seq11 Length=1216349 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 68441 CGTCATTCTAGACGGAAAAGCGTGCGGGTTTATGATAAGATCAGGAACCACTCCGTCTTT 68500 |||||||| ||| |||| || || || || ||||| ||||| ||||| || || ||| | Sbjct 1154448 CGTCATTCGAGAAGGAATGGCATGTGGATTGATGATGAGATCGGGAACAACGCCCTCTCT 1154389 Query 68501 ATCAAAGGGCATGTCTTCTTG-CGATTTCACGGCGCCGCATGTTCCTTTTTGCGC--GGT 68557 ||| ||||| || ||||| |||| | | || ||| |||||||| | || Sbjct 1154388 GGTAAATGGCATATCCTCTTGTCGATA-CGTGATACCAATTGTACCTTTTTGACCATGGC 1154330 Query 68558 AAACGAGGCAAATTTATCACCCATTTCAGGTATCCTGGGGGTCCGCAATCTCACTTTGAC 68617 | ||||||||||| ||||| || | || ||| ||| ||| |||| | ||||||||| Sbjct 1154329 GA--GAGGCAAATTTGTCACCGATCTGGGGAATCTTGGTGGTTCGCACCCGCACTTTGAC 1154272 Query 68618 GATTTTACGGCCGTC 68632 || || | ||||| Sbjct 1154271 GAACTTTTGCCCGTC 1154257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290975854400