Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02]
40 sequences; 37,173,200 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq9 87.8 2e-12
seq11 82.4 7e-11
>seq9
Length=1292822
Score = 87.8 bits (96), Expect = 2e-12
Identities = 159/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| || | || || |||||| | |||||||| || || || | ||||||||| |
Sbjct 436445 CCACCACGCAGTCTCAACACGAGATGCAAAGTGCTCTCTTTCTGGATGTTATAATCCGAC 436504
Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898
| ||| || ||| |||| ||| || ||| ||||||| | | || |||||||| |
Sbjct 436505 AA--TGTCCGACCATCTTCCAACTGCTTGCCGGCAAAGATGAGGCGCTGTTGATCTGGGG 436562
Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958
||||||| |||||||| | || || ||| || ||| || || | | || |
Sbjct 436563 GAATACCCTCTTTGTCTTGGATCTTGCTCTTCACATTATCGATTGTATCCGAGCTTTCCA 436622
Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009
| || | ||||||||||| || || | || || ||||||||||||||||
Sbjct 436623 CTTCGAGTGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCATGC 436673
>seq11
Length=1216349
Score = 82.4 bits (90), Expect = 7e-11
Identities = 138/195 (71%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 68441 CGTCATTCTAGACGGAAAAGCGTGCGGGTTTATGATAAGATCAGGAACCACTCCGTCTTT 68500
|||||||| ||| |||| || || || || ||||| ||||| ||||| || || ||| |
Sbjct 1154448 CGTCATTCGAGAAGGAATGGCATGTGGATTGATGATGAGATCGGGAACAACGCCCTCTCT 1154389
Query 68501 ATCAAAGGGCATGTCTTCTTG-CGATTTCACGGCGCCGCATGTTCCTTTTTGCGC--GGT 68557
||| ||||| || ||||| |||| | | || ||| |||||||| | ||
Sbjct 1154388 GGTAAATGGCATATCCTCTTGTCGATA-CGTGATACCAATTGTACCTTTTTGACCATGGC 1154330
Query 68558 AAACGAGGCAAATTTATCACCCATTTCAGGTATCCTGGGGGTCCGCAATCTCACTTTGAC 68617
| ||||||||||| ||||| || | || ||| ||| ||| |||| | |||||||||
Sbjct 1154329 GA--GAGGCAAATTTGTCACCGATCTGGGGAATCTTGGTGGTTCGCACCCGCACTTTGAC 1154272
Query 68618 GATTTTACGGCCGTC 68632
|| || | |||||
Sbjct 1154271 GAACTTTTGCCCGTC 1154257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448290975854400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |