Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq19 145 1e-30 seq4 109 9e-20 >seq19 Length=892661 Score = 145 bits (160), Expect = 1e-30 Identities = 154/199 (77%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| ||||| | ||||| ||||||||||| ||||||||||| || || Sbjct 819004 GCGAAGCGACACCGCAAGATCT-TGCGAGACAACATCCAAGGTATCACCAAGCCGGCCAT 819062 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||||| ||||| ||||| || ||||||||| |||| | || |||| ||||||| Sbjct 819063 TCGACGTCTCGCTCGCCGTGGCGGTGTCAAGCGTATCTCAGCCATGATCTACGAAGAGAC 819122 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| | |||| ||||||| || || |||| |||||| || ||| || || Sbjct 819123 CCGTGGTGTTCTCAAGACCTTCCTCGAGGGTGTCATCCGTGATGCCGTCACCTACACTGA 819182 Query 16612 GCACGCTAAACGTAAGACT 16630 ||||| ||| ||||| || Sbjct 819183 ACACGC-AAAGGTAAGCCT 819200 >seq4 Length=2201668 Score = 109 bits (120), Expect = 9e-20 Identities = 85/99 (86%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| |||| |||||||| ||||| ||||| || |||||||| ||||| Sbjct 132407 GCAAAGCGTCACCGCAAGATC-CTTCGAGACAACATTCAAGGTATTACCAAGCCTGCTAT 132465 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||||||||||| || || ||||||||| |||| Sbjct 132466 TCGTCGTCTGGCTCGTCGCGGAGGTGTCAAGCGTATCTC 132504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075163427720