Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq18 109 5e-19 seq9 105 6e-18 >seq18 Length=894979 Score = 109 bits (120), Expect = 5e-19 Identities = 250/372 (67%), Gaps = 6/372 (2%) Strand=Plus/Minus Query 146203 GCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTC 146262 ||| | ||| ||||| || | || | ||| || ||| |||||| || ||| ||| Sbjct 724024 GCGAATGCAGTGAACGTTGAGCCCAATACCTCCAGCGTTCTTGGAGATCATGGCACAGAT 723965 Query 146263 GCCGAGCGTCTCGTAGATGCCGTCAATGCTATCGCTTCGAATGCCGAGCAGAAAGCACGA 146322 ||| || ||||||||||| ||||| || || | || ||| || ||||| || Sbjct 723964 TTTGAGAGTGTCGTAGATGCCTTCAATACTGTCCTCTTTCATATCGATGAGGAAGCAGGA 723905 Query 146323 GCACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACAT 146382 || ||| | ||| || || || ||||| ||| || || || || || | Sbjct 723904 CGCCAACTGTCCTTGCGGTGTACCAGCGTTGAACAGCGTAGGAGAAGCATGTGTGAAGAA 723845 Query 146383 TTTTCGGCTCATCATCCGATACGTTTCGATAGCG-TCTTGAATGTCGTCGCCATGAATGC 146441 ||| || ||| | || ||||| || || ||| || ||||||||||||| |||| Sbjct 723844 CTTTTGGGACATGAGGTTGTAAGTTTCAATCGCCCTCTCGA-TGTCGTCGCCATGGATGC 723786 Query 146442 CCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTA 146501 ||| || || ||||| |||||||||||||| | ||| || ||||| || ||||||| | Sbjct 723785 CCACAGAAACACGCATAAGCATGTGTTGGGGTCTCTCAGCTACTTGTTTACCAATCTTGA 723726 Query 146502 --ACAAATAGCCGTTCTCCAGGGTTTTGTATCCGAAAAATTTGTACGTATAGTCTACGGC 146559 | | || ||| |||| |||||| | |||||| ||| ||| | | ||| | | Sbjct 723725 GGAGATATGAACGT--TCCAAAGTTTTGAAGCCGAAATATTGGTAATTGAAATCTCTGTC 723668 Query 146560 ATGGTCGATAGC 146571 || | ||||||| Sbjct 723667 ATAGACGATAGC 723656 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115 ||||||||||||| || || || |||| || ||||| | || | || || || | | Sbjct 725174 GATTGACGACCTGGAATTCTCCAGCCAGGACGCGACGAGAGTAGATATTCGAGGTATATG 725115 Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175 | || ||| ||||||| || |||| ||| || | ||| | ||| || ||||| ||||| Sbjct 725114 GCTCGAAACACTCGTTGTTTCCCAAGATCTGGGAGGTGGATGCTGTCGGCATAGGCGCCA 725055 Query 145176 CCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 | | | || ||||| | || ||||| |||||| |||| | | ||||||||| Sbjct 725054 CAAGGAGAGAGTTGCGAACACCATGCTTGGCGATGTCAGCCTTCAAGCTGGCCCAATCCC 724995 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTG 145272 | | | ||| | ||| |||||||||||||||| Sbjct 724994 ACAAATCCGACGGTGTGACGCCCCACATGTCGTACTG 724958 >seq9 Length=1292822 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| | ||| || | ||||| || || || || ||||||||||| ||| Sbjct 436672 GCCACCTCGCAGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGA 436731 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| ||| |||| || |||||||| || ||||| Sbjct 436732 CAGTGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAGG 436791 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| || || ||| || ||| | | || | || |||| || || | Sbjct 436792 AATGCCTTCCTTATCCTGGATCTTGCTCTTCACATTATCGATGGTGTCGGACGATTCAAC 436851 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| | || || ||||| || ||||| Sbjct 436852 TTCTAAGGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATTTGCAT 436899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012563993600