Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq9 262 5e-65 seq18 190 3e-43 >seq9 Length=1292822 Score = 262 bits (290), Expect = 5e-65 Identities = 574/852 (67%), Gaps = 16/852 (2%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 ||||| || |||||||| || || ||||| || || ||||| || | | || ||||| Sbjct 487334 TTTTGATAGTCACCCACGCGCTTCTCGAAGAAGTTGGTTTTGCCAGCAAGAGAGATATTG 487275 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 |||||||| ||||| ||||| |||||||| |||| || || || | || || Sbjct 487274 TCCATGAAGTCGAAGGGATTCGTAACATTGTAAAACTTGTTGTTGCCAAGAGCAACAAGT 487215 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 | | ||| || |||||||| || ||| ||||||| | ||||| || | | | Sbjct 487214 AGACGATCAGCAACAAATTCAATGTATTGCTTCATCAAGGTCGAGTTCATGCCGAGCAAT 487155 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 || ||||| |||| ||||| ||||| || || ||| || || ||||| || Sbjct 487154 GCGCACGGCAGAGCATCAGTGAGAAACTCTTGCTCGATCACGACTGCCTCGGTTATGATG 487095 Query 32610 GATCTTACTGTTTC--TTCAC--TCGGTGGATACAATAAATGTTTAAACATCAAACATGC 32665 | ||| | | || | || |||| | || || |||| | || || Sbjct 487094 TCTTCTACCGCCTGCTTTGATGGTCTGTGGTT----TAGGTGGGAGAACAAGAGGCAGGC 487039 Query 32666 GAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGG 32725 ||||| || ||||||||||| | | || | || || || || ||||| || || Sbjct 487038 AAAATCTGTATGCAGACCCTCGTCACGAGAGATCAGCTCATTCGAGAAGGTGAGACCTGG 486979 Query 32726 CATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCC 32785 ||| ||||||||||| || |||||||| | || || || || ||||||||||| ||||| Sbjct 486978 CATCAGGCCACGCTTCTTGAGCCAAAAGACAGATGCGAAGGAGCCAGAAAAGAAGATTCC 486919 Query 32786 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA-CCGGCGC--TGTCATGTATCCA 32842 || || || || ||||||| ||| | | || || || | | |||| ||||| Sbjct 486918 CTCGACGGCTGCGAAGGCAACAAGGCGTTGAGCAAAAGTCGACTCCTTGTCCGAAATCCA 486859 Query 32843 CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 32902 ||||||| | ||| || ||| | ||||| || || || || || | || || Sbjct 486858 TCGAAGAGCCCAGTTGGCTTTTTTTCGGATGCAAGGAATGGTGTCAATGGCGTCGAACAG 486799 Query 32903 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 32962 || | | ||| || || || | || || |||||||| | ||| ||||| ||||| Sbjct 486798 GTATTGTCTTTGTTTTGGCTCCTTGATGTACGTGTCAATCAACAAACTGTACATCTCCGA 486739 Query 32963 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTAC 33022 |||||||| || || |||||||| || |||||||| | |||||||| || || || Sbjct 486738 GTGAATGTTCTCCATCATGATTTGAAAGCCATAGAAGCACCGAGCCTCGGGTATTTGGAC 486679 Query 33023 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 33082 ||| |||||||||| | | ||||||||| || || || |||||||| ||||| || Sbjct 486678 TTCGCCTGAAAATCGTTCGACGAGATTTTCATTGACAATGCCATCACTGGCAGCAAAGAA 486619 Query 33083 CGCCAATACATGTTTTATAAAATATTTTTCGTC-TGGTGTTA---GTTTATTCCAATCAT 33138 || | || || | || ||| ||||||| | || ||| ||| | |||| |||| Sbjct 486618 GGCAAGGACGTGGGAGACGAAGTATCTTTCGTCATCGT-TTAGACGTTCACTCCAGTCAT 486560 Query 33139 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33198 |||||| || | || |||||||| ||||||| || || || || || || |||| Sbjct 486559 GTTGATCTTTTGACAGGTCGACTTCTTCTGCTGTCCAGAAAGAAGCTTCGGCTTTCTTAT 486500 Query 33199 ACATATTCCAGA 33210 |||| | ||||| Sbjct 486499 ACATCTGCCAGA 486488 >seq18 Length=894979 Score = 190 bits (210), Expect = 3e-43 Identities = 1202/1905 (63%), Gaps = 61/1905 (3%) Strand=Plus/Minus Query 61838 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 61897 |||| ||||| |||||| || ||||| || || |||| | ||||| || ||||||||| Sbjct 725523 TCCTGGTCCACTGTGAACTGGATGGGTGCAGAGGCGGCCATGGTACGCAGGTAGTACATT 725464 Query 61898 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 61957 ||||| || | || || |||| || ||||||||| || | ||| | Sbjct 725463 CCCGTCTTCAAGCCAAGTTTCCACCCAGCAAAATGCATGGAGGTGATCTTGCCCATGGTA 725404 Query 61958 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62017 || || | ||| ||||| | ||| || ||| || ||||| || |||| || ||| Sbjct 725403 GGCTCCTTGAGATGAATATTTAGAGACTGGGATTGGTCAATGAATGCACCCCGATCAGCA 725344 Query 62018 GCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62077 ||||| | | ||| || ||| || ||||||| ||| || || | | || ||| Sbjct 725343 GCCATCTGCACAATAGTTCGTTGGCTGATCTCCCAAACAGTCTTGTACAATGCTTTGATA 725284 Query 62078 TCTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62134 || | |||| ||| | |||| || | || || ||||| || || || || ||||| Sbjct 725283 TCAGCAGGAATGTTGGGAATATTTTGGACTGAGCCGCCATCAGCAATGATTCTGTTCTTC 725224 Query 62135 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62194 || | || ||| | || | | || | | || ||||| || || Sbjct 725223 ATGTTGTCGGACCAGAGACCCAGATCAACAAGATCTTTCAACAGCCATGGATTGACGACC 725164 Query 62195 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 62254 || |||||||||| || || | |||| ||| ||||| |||||| || || | | || Sbjct 725163 TGGAATTCTCCAGCCAGGACGCGACGAGAGTAGATATTCGAGGTATATGGCTCGAAACAC 725104 Query 62255 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 62314 || || |||||||| || || | || ||||| ||||||||||| ||||| | | | Sbjct 725103 TCGTTGTTTCCCAAGATCTGGGAGGTGGATGCTGTCGGCATAGGCGCCACAAGGAGAGAG 725044 Query 62315 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCGA 62373 || | || ||| | | ||| | | | || | || | |||||| ||| | |||||| Sbjct 725043 TTGCGAACACCATGCTTGGCGATGTCAGCCTTCA-AGCTGGCCCAATCCCACAAATCCGA 724985 Query 62374 CGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTT----ACTGGCGTACGATCCTA 62429 |||| || || || || || ||||| | || || || Sbjct 724984 CGGTGTGACGCCCCACATGTCGTACTGAAGCTCGCCTTTCGAGACTGGAGAACCCTCGTA 724925 Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 | || || |||| ||| || | || || ||||| || | ||| || | Sbjct 724924 C----GTCTCATATGTTCCGAGCTCTTTGGCAAGCTCACAGGAGGCAGTGAGTGCGCCAT 724869 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAATGGAT 62549 ||| || ||||| || |||| | ||||| | | ||||| | ||| ||||| Sbjct 724868 GATAGATCGTTTCAAATATCTGGGTGTTTAGTTGACGTGCTTCAGGAGAATCGAATGGCA 724809 Query 62550 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 | || || ||| || ||||| | || |||||||||| ||| ||||||||||||| Sbjct 724808 GACGCAATGCAAGAAAGGCATCTGCAAGACCCTGAACACCAAGACCAATAGGTCTATGTC 724749 Query 62610 TCTTATTAGAGATTTCAGCTT-----CTGGAATAGGATAATAATTAATATCTATAATTTT 62664 ||| ||| || | || || | ||||||| | || || | | | Sbjct 724748 GGAAATTGC----TTCGGCGTGCCTCCTCGACT-GGATAATGGCTGCGTTCGATGACTCT 724694 Query 62665 ATTGAGATTTC-TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA-TCGC 62722 || || || | || || || | |||||| || | || | ||| || | |||| Sbjct 724693 GTTCAGGTTGCGTGTCACG-ACCTGGACCACTTCGTGGAGGCGGCCAAAGTCGTACTCGC 724635 Query 62723 C-CATCTATTACAAACAT--GTTCAATG---CAACAGATGCCAGATTACAAACGGCTACC 62776 | | | | | ||||| || | | |||| ||||||||||| ||||| || ||| Sbjct 724634 CTCGACCAGAATCAACATAAGTGGGAAGAGCCAAC-GATGCCAGATTGCAAACTGCGACC 724576 Query 62777 TCATTAGCATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCC 62835 |||| | | ||| |||| | ||||||||||| ||||| | ||| || || Sbjct 724575 TCATCTGG-TGCGCTGTATTCAACAATCTCAGTGCAGAGATTGGAGCTTCGGATAGTCCC 724517 Query 62836 TAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACC 62895 | || | || || ||||||||||||||||||||||||||||| ||| | || || || Sbjct 724516 AAGGTTCTTCTGGTTGCTCTTTTTGTTACACGCATCCTTATAAAGCATGTACGGCGTCCC 724457 Query 62896 AGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTATTATAGATT 62954 ||| || ||||||| || | ||| || | ||||| | || | |||| | | || || Sbjct 724456 AGTCTCTGTCTGAGACTCAAGAATTGCATACCAGA-GTTTCTGGGCCT---TCACAGCTT 724401 Query 62955 T-GTATCTC--TTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAA 63011 | | | | ||| | |||||| || | | ||||||||||| || | | Sbjct 724400 TCCGACCACGGCCTTCCTTCTCGTATCTCTCGTAAAGTGCCTCGAACTCGTCACCATACA 724341 Query 63012 CATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCA 63071 ||| |||| || ||| || | || || | | | ||| || | | || | Sbjct 724340 CATCTGCCAGGCCTGGAGCCTCGTGAGGGCAGAAGAGAGTCCAGTCAAGATTCTTCTCGA 724281 Query 63072 CTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGT 63130 | |||||||| || || || || |||| ||||| ||| || ||||||| || | | Sbjct 724280 CACGTTTCATGAATAGGTCTGGGGTCCAGAGAGC-ATAGAAGAGATCTCGGGCCCGGCTT 724222 Query 63131 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 63190 ||||| || || |||||| ||| || | || | | | || | |||||| || Sbjct 724221 TCCTCCTTGCCGTGATTCTTGCGAAGGTCCAAAAAGTCAAAGACGTCGGCATGCCATGGC 724162 Query 63191 TCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 63250 || | ||||| || | | || || || ||||| || || ||||| | || | |||| Sbjct 724161 TCAAGATATATAGCGAAGGCACCCGGACGCTTGTTGCCGCCTTGATCGACATAACGAGCG 724102 Query 63251 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAG 63310 ||||| || | || | ||||| ||| | | || ||||||| ||||| || || Sbjct 724101 GTGTTGTTGAAGACGCGTAACATAGGAGTCAATCCGTTGGATGACCCATTTGTGCCACCA 724042 Query 63311 ATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGACCTATTCCCCCTGCCATTTT 63369 || ||| ||| | || ||||| | | | | | || || || || || || | || Sbjct 724041 ATGTAGGAACCAGTAGCGCGAAT-GCAGTGAACGTTGAGCCCAATACCTCCAGCGTTCTT 723983 Query 63370 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 63429 ||||| | || || ||| | || || |||||||| || ||||| || || |||| Sbjct 723982 GGAGATCATGGCACAGATTTTGAGAGTGTCGTAGATGCCTTCAATACTGTCCTCTTTCAT 723923 Query 63430 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGG 63489 | | || || ||| | || || | || || || || || | ||||| Sbjct 723922 ATCGATGAGGAAGCAGGACGCCAACTGTCCTTGCGGTGTACCAGCGTTGAACAGCGTAGG 723863 Query 63490 AGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTAT 63549 |||||| || || || | |||| || | || ||||| || ||||| || || || Sbjct 723862 AGAAGCATGTGTGAAGAACTTTTGGGACATGAGGTTGTAAGTTTCAATCGCCCTCTCGAT 723803 Query 63550 ATC----CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63605 || |||| |||| || || | |||||||| | |||||| || ||||| ||| Sbjct 723802 GTCGTCGCCATGGATG----CCCACAGAAACACGCATAAGCATGTGTTGGGGTCTCTCAG 723747 Query 63606 CGATCTTG-TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAG 63664 | | |||| || || || | | || || |||||||||||| || || ||||| Sbjct 723746 CTA-CTTGTTTACCAATCTTGAGGAGATATGAACGTTCCAAAGTTTTGAAGCCGAAATAT 723688 Query 63665 TTGTA--TGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTT 63707 | ||| ||||| |||| || || | ||| | ||||| |||| Sbjct 723687 TGGTAATTGAAA--TCTCTGTCATAGACGATAGCAGAGTTCAGTT 723645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631683184000