Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq9 123 2e-23 seq5 84.2 2e-11 >seq9 Length=1292822 Score = 123 bits (136), Expect = 2e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||| || ||| |||||||| |||||||||| || Sbjct 436671 ATGCAGATCTTTGTCAAGACCTTGACAGGGAAAACCATCACACTCGAAGTGGAAAGCTCG 436612 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || ||||| ||||| || ||| |||||||| || ||||| || || ||| Sbjct 436611 GATACAATCGATAATGTGAAGAGCAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAA 436552 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || || ||||||| ||| || || ||||| || Sbjct 436551 CAGCGCCTCATCTTTGCCGGCAAGCAGTTGGAAGATGGTCGGACATTGTCGGATTATAAC 436492 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || || ||||| ||| | ||| | ||| | || || | || || ||||| Sbjct 436491 ATCCAGAAAGAGAGCACTTTGCATCTCGTGTTGAGACTGCGTGGTGGCAATTA 436439 Score = 104 bits (114), Expect = 2e-17 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 25004 AATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACAC 25063 |||| | || |||||| |||| || || ||||||| | || || |||||||||||||| Sbjct 437122 AATAGTCGTCAAGACTCTGACTGGGAAGACCATCACTCTGGAGGTCGAGTCGTCTGACAC 437063 Query 25064 TATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAG 25121 |||||| || || ||| ||||| ||||| || || ||||| || || || || Sbjct 437062 TATCGA--CAATGTAAAGAGCAAAATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAA 437005 Query 25122 CGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATT 25181 || |||| || || || |||||| | ||||||| || || | ||| ||||| || Sbjct 437004 CGACTTATCTTCGCTGGTAAACAACTCGAAGATGGCCGAACCCTATCCGACTACAACATC 436945 Query 25182 CAAAAAGAATCCACGCTACA 25201 || |||||||| || || || Sbjct 436944 CAGAAAGAATCTACTCTTCA 436925 >seq5 Length=1929936 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||| | || || || ||||||| |||| || || || || ||||| || Sbjct 1366241 TTCGTCAAGACCCTAACGGGCAAGACCATCACGCTCGAGGTCGAATCCTCCGACACAATT 1366300 Query 25068 GAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127 || | ||| || ||| |||||||| || || ||||| ||||| || || | Sbjct 1366301 GACAACGTCAAGAGCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAACGCCTG 1366360 Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAA 25187 || || |||||||||||| | ||||||| ||||| || || |||||||| || ||| Sbjct 1366361 ATCTTCGCCGGCAAACAACTCGAAGATGGCCGCACCCTGTCAGACTACAATATCCAGAAA 1366420 Query 25188 G 25188 | Sbjct 1366421 G 1366421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327788752600