Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq9 210 2e-49 >seq9 Length=1292822 Score = 210 bits (232), Expect = 2e-49 Identities = 488/725 (67%), Gaps = 13/725 (2%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-AAGACGTA 92984 |||||| |||||||| ||||| || |||||| | ||||| || || || || | Sbjct 487209 ATCAGCAACAAATTCAATGTATTGCTTCATCAAGGTCGAGTTCATGCCGAGCAATGCGCA 487150 Query 92985 CAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 | || ||||| || || | || |||| |||||| || || || || | | ||| ||| Sbjct 487149 C-GGCAGAGCATCAGTGAGAAACTCTTGCTCGATCACGACTGCCTCGGTTATGATGTCTT 487091 Query 93045 TTACTCTACTA-TTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 ||| | || |||| |||| | || | | | ||| | ||| ||||| || Sbjct 487090 CTAC-CGCCTGCTTTGATGGTCTGTGGTTTAGGTGGGAGAACAAGAGGCAGGCAAAATCT 487032 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163 ||||| | ||| ||||| || || |||| |||||| ||| || | |||||| | ||| Sbjct 487031 GTATGCAGACCCTCGTCACGAGAGATCAGCTCATTCGAGAAGGTGAGACCTGGCATCAGG 486972 Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223 || || |||||||||||||| | || || || |||||||| || || || || ||| Sbjct 486971 CCACGCTTCTTGAGCCAAAAGACAGATGCGAAGGAGCCAGAAAAGAAGATTCCCTCGACG 486912 Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTG-CTG--ATCCATTTT 93280 ||||| || || |||| |||| |||||| | || | || | | |||||| Sbjct 486911 GCTGCGAAGGCAACAAGGCGTTGAGCAAAA---GTCGACTCCTTGTCCGAAATCCATCGA 486855 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340 | |||||| | ||||||||| || ||||| | || || || |||| || ||||| Sbjct 486854 AGAGCCCAGTTGGCTTTTTTTCGGATGCAAGGAATGGTGTCAATGGCGTCGAACAGGTAT 486795 Query 93341 TCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGG 93400 | || | | | || ||||| || || || |||| | ||||| || || || Sbjct 486794 TGTCTTTGTTTTGGCTCCTTGATGTACGTGTCAATCAACAAACTGTACATCTCCGAGTGA 486735 Query 93401 ACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCT 93460 | |||||||| ||||| || || ||||| || | ||| || | || || ||||| Sbjct 486734 ATGTTCTCCATCATGATTTGAAAGCCATAGAAGCACCGAGCCTCGGGTATTTGGACTTCG 486675 Query 93461 TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCC 93520 ||||||| || ||||||||||||||||| || ||||| || ||||| || || Sbjct 486674 CCTGAAAATCGTTCGACGAGATTTTCATTGACAATGCCATCACTGGCAGCAAAGAAGGCA 486615 Query 93521 AATATATGCTTTATAAA--ATGTTTC-TCATCATCTTTAAGCTTATCCCAATCGGATAGA 93577 | | || | || || |||| ||||| | | | | | | ||| || | || Sbjct 486614 AGGACGTGGGAGACGAAGTATCTTTCGTCATCGTTTAGACGTTCACTCCAGTCATGTTGA 486555 Query 93578 TCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATA 93637 |||||||| || ||||||||||| | ||||| || || ||||| ||||| || ||||| Sbjct 486554 TCTTTTGACAGGTCGACTTCTTCTGCTGTCCAGAAAGAAGCTTCGGCTTTCTTATACATC 486495 Query 93638 TCCCA 93642 | ||| Sbjct 486494 TGCCA 486490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860521569600