Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq9 131 1e-25 seq14 93.3 4e-14 seq5 93.3 4e-14 >seq9 Length=1292822 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || || ||||| |||| || |||||||||| | | Sbjct 436671 ATGCAGATCTTTGTCAAGACCTTGACAGGGAAAACCATCACACTCGAAGTGGAAAGCTCG 436612 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || || |||||||| ||||||||||| || |||||| Sbjct 436611 GATACAATCGATAATGTGAAGAGCAAGATCCAAGACAAAGAGGGTATTCCCCCAGATCAA 436552 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||||||||| ||||| || ||| || || | || ||||| ||| Sbjct 436551 CAGCGCCTCATCTTTGCCGGCAAGCAGTTGGAAGATGGTCGGACATTGTCGGATTATAAC 436492 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| ||| | ||| | || ||| || |||| || || Sbjct 436491 ATCCAGAAAGAGAGCACTTTGCATCTCGTGTTGAGACTGCGTGGTGG 436445 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || ||||| || || |||| | ||||| ||| | || Sbjct 436899 ATGCAAATCTTCGTCAAGACATTGACCGGCAAGACCATCACCTTAGAAGTTGAATCGTCC 436840 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || || ||||| || ||||| || ||||| Sbjct 436839 GACACCATCGATAATGTGAAGAGCAAGATCCAGGATAAGGAAGGCATTCCTCCAGATCAG 436780 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| ||| | |||||| ||||| | ||||| |||||| Sbjct 436779 CAGCGCTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACACTGTCCGACTACAAC 436720 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| |||||||| || ||||| | ||| || || |||| || || Sbjct 436719 ATTCAGAAAGAATCTACACTACATCTTGTTCTGAGACTGCGAGGTGG 436673 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || ||||||| || || || ||| ||||| | || || | || Sbjct 437385 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCAGTGATACTATCGATAATGTGAAGAGC 437326 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||||||||| || ||||| || |||||||| || ||||||||| Sbjct 437325 AAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAGCGTCTTATCTTCGCCGGCAAA 437266 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || || ||| ||| | ||||| |||||||| || || || || || | || Sbjct 437265 CAGCTCGAAGACGGCCGTACCCTATCCGACTACAACATCCAGAAGGAGTCAACACTTCAC 437206 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 || ||| | || | || ||||| Sbjct 437205 TTGGTTCTTCGTCTCCGTGGAGG 437183 Score = 109 bits (120), Expect = 5e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290 || || ||| | || || || || ||||||| || || || | | || || | ||| Sbjct 437115 GTCAAGACTCTGACTGGGAAGACCATCACTCTGGAGGTCGAGTCGTCTGACACTATCGAC 437056 Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350 || | || |||||||| ||||||||||||||||| || ||||| ||||| ||||| Sbjct 437055 AATGTAAAGAGCAAAATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAACGACTTATC 436996 Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 || || || ||||| | || ||| ||| ||| | ||||| |||||||| || |||||| Sbjct 436995 TTCGCTGGTAAACAACTCGAAGATGGCCGAACCCTATCCGACTACAACATCCAGAAAGAA 436936 Query 22411 TCCAC 22415 || || Sbjct 436935 TCTAC 436931 >seq14 Length=1110587 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||||||||| || |||||||||||||| || || || || |||||||| || | || Sbjct 440852 AGACAAGGAGGGCATCCCACCCGATCAACAGCGACTGATCTTCGCCGGCAAGCAACTCGA 440911 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTT 22430 || ||| || ||||||| ||||| || || || ||||| ||| | ||| | || | Sbjct 440912 AGACGGCCGGACTCTCTCCGACTACAATATCCAGAAGGAATCAACCCTCCATCTCGTGCT 440971 Query 22431 GCGATTGCGCGGAGGT 22446 ||| | ||||| ||| Sbjct 440972 CCGACTCCGCGGCGGT 440987 >seq5 Length=1929936 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 22228 TTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTG 22287 || || || || |||| || || || |||| || || || ||| || |||| || | Sbjct 1366241 TTCGTCAAGACCCTAACGGGCAAGACCATCACGCTCGAGGTCGAATCCTCCGACACAATT 1366300 Query 22288 GACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTT 22347 ||| | |||| || || |||||||| ||||| || ||||| || || ||||| || Sbjct 1366301 GACAACGTCAAGAGCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAACGCCTG 1366360 Query 22348 ATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAA 22407 || || ||||||||||| | || ||| ||||||| | || || ||||| || || ||| Sbjct 1366361 ATCTTCGCCGGCAAACAACTCGAAGATGGCCGCACCCTGTCAGACTACAATATCCAGAAA 1366420 Query 22408 G 22408 | Sbjct 1366421 G 1366421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727795382600