Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq7 89.7 1e-12 >seq7 Length=1521098 Score = 89.7 bits (98), Expect = 1e-12 Identities = 163/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 280160 CTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCT 280219 ||| || || | ||||||||| ||||||||||| || ||||| || || |||| ||| | Sbjct 882883 CTCTCGTATCGCTGTCATTGGTCCCAATGGTGCTGGCAAGTCCACTCTTGTCAACGTCTT 882824 Query 280220 GACTGGCGA---GACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGAT 280276 |||||| || || || |||||| || ||||| ||||| ||||| || || Sbjct 882823 GACTGGTGAATTGATCC---CCACTGCTGGTGACGTTTATCAGCATGAGAACATTCGCAT 882767 Query 280277 GGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAA 280336 || ||| || |||||||| ||| ||||| || | || |||||| ||| || Sbjct 882766 CGCCTACATCAAGCAGCACGCCTTCGCTCACATTGATCATCATTTGGACAAGACACCGTC 882707 Query 280337 CCAATACATTCAGTGGCGCTATGCA-AGTGGGCAGGATCTGGAGTCGGTGGATCG 280390 |||| ||||| ||||| | | || | ||| |||||| ||| | |||| || Sbjct 882706 TGAATATATTCAATGGCGAT-TCCAGACTGGTGAGGATCGTGAGACTATGGACCG 882653 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 280680 GGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAG 280739 ||||| ||| | ||| || | ||||| ||||| || ||| | ||||| || ||| Sbjct 882318 GGTCTCGACACTGAGCTTGTGTCCCACTCCCGCATGCGTGGTTTGTCTGGTGGTCAGCGT 882259 Query 280740 GTCAAACTTGTCATCGGAGCA-GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGA 280798 ||||| | || | | || |||| |||||||| ||||| |||| ||||||||||| Sbjct 882258 GTCAAGGTGGTGCTTGCTGCCTGCTC-GTGGCAACGACCTCATTTGATTGTTCTCGACGA 882200 Query 280799 GCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 ||| |||||||| || ||||| || ||| ||||||||| Sbjct 882199 GCCGACCAACTACCTCGACCGAGACTCCCTTGGCGCTCTG 882160 Score = 87.8 bits (96), Expect = 4e-12 Identities = 171/250 (68%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 279321 GAAGCAGAGAAGGA-GACTGAGCCAGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGC 279379 |||| ||| |||| ||| ||| || || ||||| ||| |||| ||| | || Sbjct 883722 GAAGAGGAGGAGGATGAC-GAGGAGGGCGAAGATCTTTGTAACTGCACGTTCAACTTGGC 883664 Query 279380 ATATGGTGGGAAGATTCTGCTAAACTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTA 279439 ||||||| |||||||| || || || | ||| ||||||||||| | ||||| Sbjct 883663 TTATGGTGCTAAGATTCTTCTCAATCAAACTCATCTCCGTCTCAAGCGTGGCCAGCGGTA 883604 Query 279440 TGGTCTCATCGGTCCCAATGGAGCGGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGG 279499 ||||| |||| ||||| || | ||||| ||||| ||||||||||| |||| Sbjct 883603 CGGTCTTCTCGGACCCAACGGCTCCGGTAAATCTACTCTCATGCGCGCCATCAACAACGA 883544 Query 279500 TCAGCTGGAAGGATTTCCTAACGCATCTGAGGTAAGGACAGTGTATGTAGAGCACGACAT 279559 || | || || ||||| || |||||||| | ||| || | || |||||||| | Sbjct 883543 ACAAGTCGAGGGCTTTCCCAAAAAGTCTGAGGTCAAGACCGTATTCGTCGAGCACGATCT 883484 Query 279560 CGACTCCTCT 279569 ||| ||| || Sbjct 883483 CGATTCCGCT 883474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836273233640