Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq9 150 3e-31 seq5 129 1e-24 seq14 87.8 3e-12 >seq9 Length=1292822 Score = 150 bits (166), Expect = 3e-31 Identities = 173/233 (74%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 ||||| || || || || | ||| || | || | ||| |||||| |||||||||||| Sbjct 436439 TAATTGCCACCACGCAGTCTCAACACGAGATGCAAAGTGCTCTCTTTCTGGATGTTATAA 436498 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 || || | ||||| |||||||| |||||||| ||||| || ||||| | ||||| || Sbjct 436499 TCCGACAATGTCCGACCATCTTCCAACTGCTTGCCGGCAAAGATGAGGCGCTGTTGATCT 436558 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || ||||| || || |||||||| ||||| ||| || ||||| || || | | Sbjct 436559 GGGGGAATACCCTCTTTGTCTTGGATCTTGCTCTTCACATTATCGATTGTATCCGAGCTT 436618 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| | ||||||||||| || || | ||||||||| || |||||||| Sbjct 436619 TCCACTTCGAGTGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 436671 Score = 147 bits (162), Expect = 4e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| ||||| || || ||||| || ||||| || ||||| ||||| | ||||| || | Sbjct 436692 CAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGACCATCCTCCA 436751 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| |||||||| || | | || || || || |||||||||||||| || || | Sbjct 436752 GCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGGA 436811 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| ||| || ||||||||||| | ||||| ||||| ||||||||||| || | Sbjct 436812 TCTTGCTCTTCACATTATCGATGGTGTCGGACGATTCAACTTCTAAGGTGATGGTCTTGC 436871 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | ||||||||||| || ||||| Sbjct 436872 CGGTCAATGTCTTGACGAAGATTTGCAT 436899 >seq5 Length=1929936 Score = 129 bits (142), Expect = 1e-24 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 |||| ||||| || || || || || || | |||||||| | || || |||||||| | Sbjct 1366421 CTTTCTGGATATTGTAGTCTGACAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAGA 1366362 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | || | ||| ||||| ||||| ||||| || |||||||| ||||| ||||||| | Sbjct 1366361 TCAGGCGTTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGCTCTTGACGTTGT 1366302 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 | || ||||| | ||||| || || | |||||||| || ||||| ||||||||||||| Sbjct 1366301 CAATTGTGTCGGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGTTAGGGTCTTGACGA 1366242 Query 68452 A 68452 | Sbjct 1366241 A 1366241 >seq14 Length=1110587 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 68368 CTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGG 68427 |||||||||| |||||| ||||| || |||| ||||| || || | |||||| | Sbjct 440773 CTTGAATCTTGCTCTTGACATTGTCGATAGTATCTGACGATTCGACCTCAAGGGTGATTG 440714 Query 68428 TTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | || |||||||||||||||||||| ||||||||| || Sbjct 440713 TCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATTTTG 440676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621939188800