Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq9 219 8e-52 seq18 150 3e-31 >seq9 Length=1292822 Score = 219 bits (242), Expect = 8e-52 Identities = 498/731 (68%), Gaps = 21/731 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCC--ACCAGGTTCA 42480 || |||||||| || ||| ||| ||||| |||||||| || || | | || | |||| Sbjct 486613 CTTGCCTTCTTTGCTGCCAGTGATGGCATTGTCAATGAAAATCTCGTCGAACGATTTTCA 486672 Query 42481 TGAAAGAGGTGCAG-TACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAG 42539 | || || || ||| ||||| || |||||||| ||||| || || || ||| Sbjct 486673 GGC--GAAGTCCAAATACCC-GAGGCTCGGTGCTTCTATGGCTTTCAAATCATGATGGAG 486729 Query 42540 AACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAG 42599 ||| | ||||| ||| ||||| || | ||||||||||| ||| || | Sbjct 486730 AACATTCACTCGGAGATGTACAGTTTGTTGATTGACACGTACATCAAGGAGCCAAAACAA 486789 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 | | |||||| | ||||| || || || || |||||| || || || ||||| Sbjct 486790 AGACAATACCTGTTCGACGCCATTGACACCATTCCTTGCATCCGAAAAAAAGCCAACTGG 486849 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719 || || ||||| | || | || || | | | || || ||||| | Sbjct 486850 GCTCTTCGATGGATTTCGGACAAGGAGTCGACTTTTGCTCAACGCCTTGTTGCCTTCGCA 486909 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAG 42779 ||||||||||| |||||||| || ||| ||||||| || |||| ||||||||| || Sbjct 486910 GCCGTCGAGGGAATCTTCTTTTCTGGCTCCTTCGCATCTGTCTTTTGGCTCAAGAAG--C 486967 Query 42780 GTGTC--GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 ||| | |||||| || |||||||||||||| || || ||| | |||||||| |||| Sbjct 486968 GTGGCCTGATGCCAGGTCTCACCTTCTCGAATGAGCTGATCTCTCGTGACGAGGGTCTGC 487027 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897 ||| || |||||||||||| ||||||| |||||| | |||| || || ||| || Sbjct 487028 ATACAGATTTTGCCTGCCTCTTGTTCTC---CCACCTAAACCACAGACCATCAAAGCAGG 487084 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC 42957 ||| | |||||| || ||||| || | ||||||| | ||||| ||||| | | | Sbjct 487085 CGGTAGAAGACATCATAACCGAGGCAGTCGTGATCGAGCAAGAGTTTCTCACTGATGCTC 487144 Query 42958 TGCCCGTG-TCCCTGGTCGGCATGAACCACGACC-TCATG-TGCAAGTACATCCAGTACG 43014 || ||||| | || |||||||||| | ||||| | ||| |||| ||||| | | | Sbjct 487145 TG-CCGTGCGCATTGCTCGGCATGAA-CTCGACCTTGATGAAGCAA-TACATTGAATTTG 487201 Query 43015 TCGCCGACCATCT-CCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCC 43073 | || || | ||| | ||| | | || || | | ||||| || ||| Sbjct 487202 TTGCTGATCGTCTACTTGTTGC-TCTTGGCAACAACAAGTTTTACAATGTTACGAATCCC 487260 Query 43074 TTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTC 43133 |||||||| ||||| || ||||| | | ||||| |||||||| |||||||||||||| Sbjct 487261 TTCGACTTCATGGACAATATCTCTCTTGCTGGCAAAACCAACTTCTTCGAGAAGCGCGTG 487320 Query 43134 GCCGACTACCA 43144 | ||||| || Sbjct 487321 GGTGACTATCA 487331 >seq18 Length=894979 Score = 150 bits (166), Expect = 3e-31 Identities = 487/745 (65%), Gaps = 22/745 (3%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 ||||| ||||| || || ||||| || | | |||| | |||||||| |||||||| Sbjct 724596 GCCAGATTGCAAACTGCGACCTCATCTGGTGCGCTGTATTCAACAATCTCAGTGCAGAGA 724537 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || || ||| || || |||| || || ||| ||| ||| || || ||||| Sbjct 724536 TTGGAGCTTCGGATAGTCCCAAGGTTCTTCTGGTTGCTCTTTTTGTTACACGCATCCTTA 724477 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 || |||||| | ||| ||| ||||| ||| | | || | | |||||| | | Sbjct 724476 TAAAGCATGTACGGCGTCCCAGTCTCTGTCTGAGACTCAAGAATTGCATACCAGAGTTTC 724417 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 ||||| || | | ||| | ||| || |||||| | ||| || |||||| Sbjct 724416 TGGGCCTTCACAGCTTTCCGACCACGGCCTTCCTTCTCGTATCTCTCGTAAAGTGCCTCG 724357 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCAC 244987 |||||| || | || || | ||||| || | ||||| | |||| |||| Sbjct 724356 AACTCGTCACCATACACATCTGCCAGGCCTGGAGCCTCGTGAGGGCAGAAGAGAGTCCAG 724297 Query 244988 TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGG 245047 || | || ||| | | |||||| ||||| ||| ||||||| || | |||||| Sbjct 724296 TCAAGATTCTTCTCGACACGTTTCATGAATAGGTCTGGGGTCCAGAGAGCATAGAAGAGA 724237 Query 245048 TCCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAGAC 245106 || | || || || ||| ||| ||| ||||| | || ||||||||||||||||| Sbjct 724236 TCTCGGGCCCGGCTTTCCTCCTTGCC-GTGATTCTTGCGAAGGTCCAAAAAGTCAAAGAC 724178 Query 245107 GTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTG 245166 |||| | ||||| ||||| | || | ||||| ||| || || ||||||||||| || || Sbjct 724177 GTCGGCATGCCATGGCTCAAGATATATAGCGAAGGCACCCGGACGCTTGTTGCCGCCTTG 724118 Query 245167 GTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222 || | | | |||||| |||||||| ||| | |||| | ||||| | Sbjct 724117 ATCGA----CATAACGAGCGGTGTTGTTGAAGACGCGTAACATAGGAGTCAATCCGTTGG 724062 Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT-- 245280 | || || ||||| ||||||| || | | | | ||| | || || | Sbjct 724061 ATGACCCATTTGTGCCACCAATGTAGGAACCAGTAGC---GCGAATGCAG-TGAACGTTG 724006 Query 245281 -GCCTAGT-CCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATG 245338 ||| | | || || |||| ||||||||| | ||| ||| | |||| ||||| ||| Sbjct 724005 AGCCCAATACCTCCAGCGTTCTTGGAGATCATGGCACAGATTTTGAGAGTGTCGTAGATG 723946 Query 245339 CCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGG 245398 || || || |||||| ||||| | || || |||||||| | || || | |||| || Sbjct 723945 CCTTCAATACTGTCCTCTTTCATATCGATGAGGAAGCAGGACGCCAACT-GTCCTTGCGG 723887 Query 245399 CTGCAC--GAGTTGAACAGAGTGGG 245421 || || | ||||||||| || || Sbjct 723886 -TGTACCAGCGTTGAACAGCGTAGG 723863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338727830400