Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq9 136 9e-27 seq5 125 2e-23 seq14 98.7 2e-15 >seq9 Length=1292822 Score = 136 bits (150), Expect = 9e-27 Identities = 175/236 (74%), Gaps = 9/236 (4%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || ||||| || || ||||| | || |||||| || || || |||| Sbjct 436669 CATG-CCACCTCGCAGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGT 436727 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||| || || || | || || || |||||||||| ||||| ||| | Sbjct 436728 CGGACAGTGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGA---T 436784 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTC 288417 |||| || ||||| ||||||||||| || ||| ||||| || || || | ||| | Sbjct 436785 CTGGAGGAATGCCTTCCTTATCCTGGATCTT-GCTCTTCACATTATCGATGGTGTCGGAC 436843 Query 288418 GATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| | ||||| ||||| ||||||| ||||||||||| || ||||| Sbjct 436844 GATTCAACTTCTAAGGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATTTGCAT 436899 Score = 125 bits (138), Expect = 2e-23 Identities = 169/230 (73%), Gaps = 9/230 (4%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| |||| || |||||| ||||| || ||||||| Sbjct 436901 CCACCACGAAGACGGAGGACGAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGAT 436960 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | |||||| || |||||||| || || || ||| || ||| Sbjct 436961 AGGGTTCGGCCATCTTCGAGTTGTTTACCAGCGAAGATAAGTCGTTGCTGA---TCCGGG 437017 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422 || || || || ||||| ||||| ||| || || || || |||| || ||| || Sbjct 437018 GGAATACCCTCCTTGTCCTGAATTTT-GCTCTTTACATTGTCGATAGTGTCAGACGACTC 437076 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCA 288472 || || || ||||| |||||||| |||||||||||||||| ||| |||| Sbjct 437077 GACCTCCAGAGTGATGGTCTTCCCAGTCAGAGTCTTGACGACTAT-TGCA 437125 >seq5 Length=1929936 Score = 125 bits (138), Expect = 2e-23 Identities = 149/198 (75%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| |||||||| ||||| | || ||||| || ||||| | |||||| || ||||||| Sbjct 1366421 CTTTCTGGATATTGTAGTCTGACAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAGA 1366362 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTT 288402 |||| || || || |||||| || ||||| || ||||| || ||| || ||||| Sbjct 1366361 TCAGGCGTTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTT-GCTCTTGACGTTG 1366303 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| ||||| || ||||||||||| ||||| || || || ||||||||| Sbjct 1366302 TCAATTGTGTCGGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGTTAGGGTCTTGACG 1366243 Query 288463 AATATCTGCATTATGTTA 288480 || | || || |||||| Sbjct 1366242 AAGCTGTG-ATCATGTTA 1366226 >seq14 Length=1110587 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || |||||||||| || |||||||| | || ||| || |||||||| ||||||| | Sbjct 440986 CCGCCGCGGAGTCGGAGCACGAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGGAG 440927 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || |||||||| | ||| || || ||||||||||| ||||||||| |||| Sbjct 440926 AGAGTCCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGTTGATCGGGTGGG 440867 Query 288367 ATTCCTTCTTTATC 288380 || || || || || Sbjct 440866 ATGCCCTCCTTGTC 440853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653795427120