Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq24 87.8 4e-12 >seq24 Length=472671 Score = 87.8 bits (96), Expect = 4e-12 Identities = 180/267 (67%), Gaps = 3/267 (1%) Strand=Plus/Minus Query 333725 CTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATG 333784 ||| || || || | ||||||||| ||||| | ||||||| || | || || || Sbjct 285338 CTTGACAAAATCTGCCAGATTTCCTTTGTAACACACCAGCTTT---TTCTGCTCATAGTG 285282 Query 333785 GATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGA 333844 | || ||||||||| |||| | ||| || ||||| || || ||||||| | | Sbjct 285281 GTAGATGTCGGTGCAAACCTCGTCCAAGAAGCCAGAGTCATGGGAGACAATCAACGAGGT 285222 Query 333845 AACGTCCTTAAGGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATG 333904 | || || | || |||| || || ||||||| | || || | ||| |||||| Sbjct 285221 GATCTCGGTATGCTTCTTCAGATACTCTTGCAGCCACTTGACATTTGCCACGTCAAGATG 285162 Query 333905 GTTGGTCGGCTCGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGC 333964 |||||||| |||||||||||||| | | ||| || | ||| || | || | || Sbjct 285161 ATTGGTCGGTTCGTCAAGAAGTAGAACGTCAGCGCCCATCAACATAGCTCTAGCTAAGGC 285102 Query 333965 GAGTTTCATTTTCCACCCTCCTGAAAG 333991 || ||||| ||||| || || || || Sbjct 285101 AAGCTTCATCTTCCAACCACCAGAGAG 285075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879434774000