Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq9 131 2e-25 seq14 84.2 2e-11 >seq9 Length=1292822 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| ||| || || ||||| | || |||||||| ||||||||||| || | Sbjct 436673 CCACCTCGCAGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGAC 436732 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || |||||||||||||| | || | |||||||| || |||||| Sbjct 436733 AGTGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAGGA 436792 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || ||||| || || || || || ||| ||| || | || || | || ||| Sbjct 436793 ATGCCTTCCTTATCCTGGATCTTGCTCTTCACATTATCGATGGTGTCGGACGATTCAACT 436852 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| || | ||||||||||||||| || || ||||| |||||||| Sbjct 436853 TCTAAGGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATTTGCAT 436899 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| ||| | ||| ||||| | || ||||| || ||||| ||||| | Sbjct 436445 CCACCACGCAGTCTCAACACGAGATGCAAAGTGCTCTCTTTCTGGATGTTATAATCCGAC 436504 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||| | ||||||||||||| | ||||| ||||| || || || ||| Sbjct 436505 AATGTCCGACCATCTTCCAACTGCTTGCCGGCAAAGATGAGGCGCTGTTGATCTGGGGGA 436564 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || ||||| ||||| || || ||| ||| || | |||||| | |||||| Sbjct 436565 ATACCCTCTTTGTCTTGGATCTTGCTCTTCACATTATCGATTGTATCCGAGCTTTCCACT 436624 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||| || || ||||| || || || || || ||||| Sbjct 436625 TCGAGTGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 436671 Score = 93.3 bits (102), Expect = 4e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || || || |||||||| || | | ||| || ||||||| ||||| Sbjct 437207 TGAAGTGTTGACTCCTTCTGGATGTTGTAGTCGGATAGGGTACGGCCGTCTTCGAGCTGT 437266 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 |||||||| | || || |||||||| || || ||||| || || || || || || || Sbjct 437267 TTGCCGGCGAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATCTTG 437326 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| ||| || | ||||||| || || || || | ||| | |||||||||||| Sbjct 437327 CTCTTCACATTATCGATAGTATCACTGGACTCGACCTCGAGAGTGATGGTCTTGCCGGT 437385 >seq14 Length=1110587 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||||||||| | || ||||| ||||| | || ||||| || || || ||||| || | Sbjct 440987 ACCGCCGCGGAGTCGGAGCACGAGATGGAGGGTTGATTCCTTCTGGATATTGTAGTCGGA 440928 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || || || ||||||| || ||||||||||| | || || ||||| || ||||| || Sbjct 440927 GAGAGTCCGGCCGTCTTCGAGTTGCTTGCCGGCGAAGATCAGTCGCTGTTGATCGGGTGG 440868 Query 64336 AATTCCTTCTTTTTCT 64351 || || || || ||| Sbjct 440867 GATGCCCTCCTTGTCT 440852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644550177600