Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 4e-14 >seq9 Length=1292822 Score = 93.3 bits (102), Expect = 4e-14 Identities = 294/449 (65%), Gaps = 19/449 (4%) Strand=Plus/Plus Query 52398 CGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATC 52457 ||| | || |||||||| |||||||| | || ||||| ||| ||| || | || Sbjct 486892 CGCCTTGTTGCCTTCGCAGCCGTCGAGGGAATCTTCTTTTCTGGCTCCTTCGCATCTGTC 486951 Query 52458 TTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCG 52517 |||| | || | | ||| | ||||| || || || ||| || ||| |||| || Sbjct 486952 TTTTGGCTCAAGAAGCGTGGCCTGATGCCAGGTCTCACCTTCTCGAATGAGCTGATCTCT 487011 Query 52518 CGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTA---CTACAAG--ACGCGCGTGA 52572 || ||||| || ||||| || || ||||| ||||||| || | | | | || Sbjct 487012 CGTGACGAGGGTCTGCATACAGATTTTGCCTGCCTCTTGTTCTCCCACCTAAACCACAGA 487071 Query 52573 CCGAAAAATTGGATTCGG-ACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAA 52631 || ||| | | ||| | | || ||| | | ||||| || | ||||| Sbjct 487072 CCATCAAA--GCAGGCGGTAGAAGA-------CATCATAACCGAGGCAGTCGTGATCGAG 487122 Query 52632 AAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATG 52691 | |||||| | || | || |||||| || |||| ||||||||| || | ||| Sbjct 487123 CAAGAGTTTCTCACTGATGCTCTGCCGTGCGCATTGCTCGGCATGAACTCGACCTTGATG 487182 Query 52692 TGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCG-GGCAGCCA-AAGT 52749 | ||||| || ||||| || |||||||| | || |||| |||| | | |||| Sbjct 487183 AAGCAATACATTGAATTTGTTGCTGATCGTCTACTTGTT--GCTCTTGGCAACAACAAGT 487240 Query 52750 ACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCA 52809 | ||| | | ||||| || || || ||| |||| || || |||| ||||| |||| Sbjct 487241 TTTACAATGTTACGAATCCCTTCGACTTCATGGACAATATCTCTCTTGCTGGCAAAACCA 487300 Query 52810 ACTTTTTCGAGAAGCGAGTCGGCGAGTAT 52838 |||| ||||||||||| || || || ||| Sbjct 487301 ACTTCTTCGAGAAGCGCGTGGGTGACTAT 487329 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| || || | |||||||||| || |||||||||||| Sbjct 437182 GCCTCCACGGAGACGAAGAACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCGGA 437241 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||| ||||| ||||| |||| |||| |||||||| || ||||| || Sbjct 437242 TAGGGTACGGCCGTCTTCGAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGGG 437301 Query 138507 TATACCTTCTTTGTC 138521 ||||| || ||||| Sbjct 437302 AATACCCTCCTTGTC 437316 Score = 84.2 bits (92), Expect = 2e-11 Identities = 131/184 (71%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || || |||||||||||| | || || || |||||||||||||| | Sbjct 436934 GATTCTTTCTGGATGTTGTAGTCGGATAGGGTTCGGCCATCTTCGAGTTGTTTACCAGCG 436993 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTT--TGTTTTA 138538 |||| || || || || ||||| || ||||| || ||||| ||| |||| | ||| Sbjct 436994 AAGATAAGTCGTTGCTGATCCGGGGGAATACCCTCCTTGTC-CTGAATTTTGCTCTTTAC 437052 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||| | |||||| ||||| | || | || || ||||||||||| | Sbjct 437053 ATTG-TCGATAGTGTCAGACGACTCGACCTCCAGAGTGATGGTCTTCCCAGTCAGAGTCT 437111 Query 138599 TTAC 138602 | || Sbjct 437112 TGAC 437115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262151868800