Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq9 125 7e-24 >seq9 Length=1292822 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || || || | ||||| ||||| ||||| ||||| ||||| ||| | Sbjct 436673 CCACCTCGCAGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGAC 436732 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| ||||||| ||||||||||| ||||| Sbjct 436733 AGTGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAGGA 436792 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||| ||||| ||| ||| || ||| | | |||| |||||| | || ||| Sbjct 436793 ATGCCTTCCTTATCCTGGATCTTGCTCTTCACATTATCGATGGTGTCGGACGATTCAACT 436852 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || |||||||||| || || || || || ||||| Sbjct 436853 TCTAAGGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATTTGCAT 436899 Score = 91.5 bits (100), Expect = 1e-13 Identities = 285/442 (64%), Gaps = 17/442 (4%) Strand=Plus/Plus Query 47148 GCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATG 47207 || ||||| ||||||||| ||||||| || ||| ||| || | | |||| | Sbjct 486901 GCCTTCGCAGCCGTCGAGGGAATCTTCTTTTCTGGCTCCTTCGCATCTGTCTTTTGGCTC 486960 Query 47208 AAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAA 47267 || | || | ||||| || ||||| || || ||||| ||||| | ||||| Sbjct 486961 AAGAAGCGTGGCCTGATGCCAGGTCTCACCTTCTCGAATGAGCTGATCTCTCGTGACGAG 487020 Query 47268 GGCCTGCACACCAACTTTGCCTGTCTCTA---CTACAAC----ACTAGAGTCGATCAAAA 47320 || ||||| || | |||||||| |||| || | || || | || | |||||| Sbjct 487021 GGTCTGCATACAGATTTTGCCTGCCTCTTGTTCTCCCACCTAAACCACAGACCATCAAA- 487079 Query 47321 GTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTT 47380 || | || ||||| | |||| || |||| || ||| ||||| Sbjct 487080 ---------GCAGGCGGTAGAAGACATCATAACCGAGGCAGTCGTGATCGAGCAAGAGTT 487130 Query 47381 TTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTA 47440 | || | || |||||||| | || | || |||||| || |||||| | || Sbjct 487131 TCTCACTGATGCTCTGCCGTGCGCATTGCTCGGCATGAACTCGACCTTGATGAAGCAATA 487190 Query 47441 CATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACAC 47500 ||| |||||||| || || || || || ||| || | |||| ||||| | Sbjct 487191 CATTGAATTTGTTGCTGATCGTCTACTTGTTGCTCTTGGCAACAACAAGTTTTACAATGT 487250 Query 47501 CGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGA 47560 |||||| ||||| || ||| |||| || || || | ||||| |||||||| ||||| Sbjct 487251 TACGAATCCCTTCGACTTCATGGACAATATCTCTCTTGCTGGCAAAACCAACTTCTTCGA 487310 Query 47561 GAAGCGCGTCGGCGAATATAAA 47582 ||||||||| || || ||| || Sbjct 487311 GAAGCGCGTGGGTGACTATCAA 487332 Score = 82.4 bits (90), Expect = 7e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||| ||||| || || ||||| ||| | || || ||| || || ||||| ||| Sbjct 436931 GTAGATTCTTTCTGGATGTTGTAGTCGGATAGGGTTCGGCCATCTTCGAGTTGTTTACCA 436990 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||| |||||||| || || || |||||||||||| ||||| ||| Sbjct 436991 GCGAAGATAAGTCGTTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATTTTGCTCTTT 437050 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | |||||| || | || | || || || |||||||| Sbjct 437051 ACATTGTCGATAGTGTCAGACGACTCGACCTCCAGAGTGATGGTCTTCCCAGTCAGAGTC 437110 Query 127097 TTTAC 127101 || || Sbjct 437111 TTGAC 437115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500562249600