Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 4e-14 seq5 84.2 2e-11 >seq9 Length=1292822 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || |||| || ||||| || || ||||| || || || || || ||| Sbjct 436670 ATGCCACCTCGCAGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCG 436729 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| || | || ||| |||| || || || ||| | ||||| || ||||| || | Sbjct 436730 --GACAGTGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTG 436787 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||| ||||| || || || || | || | ||||||||| || | Sbjct 436788 GAGGAATGCCTTCCTTATCCTGGATCTTGCTCTTCACATTATCGATGGTGTCGGACGATT 436847 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | || | || |||||||| | || || || || |||||||| Sbjct 436848 CAACTTCTAAGGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATTTGCAT 436899 >seq5 Length=1929936 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || | |||||| || ||| | |||| ||||||||||| || || ||||| ||||| Sbjct 1366387 ATCTTCGAGTTGTTTGCCGGCGAAGATCAGGCGTTGCTGGTCTGGTGGGATGCCCTCTTT 1366328 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||||| || || |||| || | || | |||||||| || ||||| ||||| || | Sbjct 1366327 GTCTTGGATCTTGCTCTTGA-CGTTGTCAATTGTGTCGGAGGATTCGACCTCGAGCGTGA 1366269 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAA 45331 || ||||| ||||| || || || || Sbjct 1366268 TGGTCTTGCCCGTTAGGGTCTTGACGAA 1366241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002973998400