Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq9 129 1e-24 >seq9 Length=1292822 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||||||| ||||| || || || || || || || | ||||||||| | || || Sbjct 436678 TCGCAGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGT 436737 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| ||||||||||| ||||||||||| | |||||||| || ||| ||| || Sbjct 436738 GCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAGGAATGCC 436797 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| ||||| ||||| |||||| |||| |||||| | | ||| || || || Sbjct 436798 TTCCTTATCCTGGATCTTGCTCTTCACATTATCGATGGTGTCGGACGATTCAACTTCTAA 436857 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || | || || || || ||||| Sbjct 436858 GGTGATGGTCTTGCCGGTCAATGTCTTGACGAAGATTTG 436896 Score = 96.9 bits (106), Expect = 8e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || |||||||| |||| ||||||||| | | || | || ||| Sbjct 437198 AGAACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCGGATAGGGTACGGCCGTCT 437257 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || ||||||||||| ||||||||||| ||||| ||| || || ||| Sbjct 437258 TCGAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCC 437317 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| |||| || || | | || || || | ||||| ||| Sbjct 437318 TGAATCTTGCTCTTCACATTATCGATAGTATCACTGGACTCGACCTCGAGAGTGATGGTC 437377 Query 199598 TTACCCGT 199605 || || || Sbjct 437378 TTGCCGGT 437385 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||||||||| |||||| |||| ||||| | || || |||| |||||| | |||||| Sbjct 436770 ATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACACTGTCCGACTACAACATTCAGAAA 436711 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 201030 || ||||| || || |||||| ||||||| ||| Sbjct 436710 GAATCTACACTACATCTTGTTCTGAGACTGCGA 436678 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||| ||||| ||||||||||||||||| |||| ||| | ||||| ||| ||||| Sbjct 436545 CTCATCTTTGCCGGCAAGCAGTTGGAAGATGGTCGGACATTGTCGGATTATAACATCCAG 436486 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 |||||| ||| | || || || |||||||| || Sbjct 436485 AAAGAGAGCACTTTGCATCTCGTGTTGAGACTGCG 436451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920995802680