Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9 134 2e-26 seq5 122 1e-22 seq14 100 3e-16 >seq9 Length=1292822 Score = 134 bits (148), Expect = 2e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | |||| || || || || ||||||||||| || ||||| | || || Sbjct 436691 ACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGACCATCCTCC 436750 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| |||||||||||||| || | || | || ||||| ||| | Sbjct 436751 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGG 436810 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| |||| | | | | |||||| |||||| || || | |||||||| ||| Sbjct 436811 ATCTTGCTCTTCACATTATCGATGGTGTCGGACGATTCAACTTCTAAGGTGATGGTCTTG 436870 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || || ||||||||||| Sbjct 436871 CCGGTCAATGTCTTGACGAAGATTTGCAT 436899 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | |||| || | ||| |||||| ||||| |||||||||| Sbjct 437181 TGCCTCCACGGAGACGAAGAACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCGG 437240 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 |||| || || |||| |||||||| ||||||||||| || | |||||||| || | | Sbjct 437241 ATAGGGTACGGCCGTCTTCGAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGG 437300 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||||||| ||||| |||| | | | | || || || || || | Sbjct 437301 GAATACCCTCCTTGTCCTGAATCTTGCTCTTCACATTATCGATAGTATCACTGGACTCGA 437360 Query 46545 CATCCACCGTGATGGTTTTGCCCGT 46569 | || | |||||||| ||||| || Sbjct 437361 CCTCGAGAGTGATGGTCTTGCCGGT 437385 Score = 93.3 bits (102), Expect = 5e-14 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 |||||| |||||||| || ||||| || ||||| || || || || | || || | || Sbjct 436459 CAACACGAGATGCAAAGTGCTCTCTTTCTGGATGTTATAATCCGACAATGTCCGACCATC 436518 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || | |||||||||||| || || | |||||| || || | || | | ||| ||||| Sbjct 436519 TTCCAACTGCTTGCCGGCAAAGATGAGGCGCTGTTGATCTGGGGGAATACCCTCTTTGTC 436578 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGAT 46557 |||||| |||| | | | | || || ||| |||||| || | ||||| Sbjct 436579 TTGGATCTTGCTCTTCACATTATCGATTGTATCCGAGCT---TTCCACTTCGAGTGTGAT 436635 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || |||| || || |||||||| ||||| Sbjct 436636 GGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 436671 >seq5 Length=1929936 Score = 122 bits (134), Expect = 1e-22 Identities = 141/186 (76%), Gaps = 3/186 (2%) Strand=Plus/Minus Query 46402 CTCCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGA 46460 || |||| |||||||||||||| || || ||||| | || ||||| || |||||||||| Sbjct 1366424 CTACTTTCTGGATATTGTAGTCTGACAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCGA 1366365 Query 46461 ATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG 46520 | |||| ||| |||||||| | || | || ||| ||||| |||||| |||||| || Sbjct 1366364 AGATCAGGCGTTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGCTCTTGA-CG 1366306 Query 46521 TCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | | | |||||| ||||| || || | ||||||||| |||||||| || || || Sbjct 1366305 TTGTCAATTGTGTCGGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGTTAGGGTCTTG 1366246 Query 46580 ACAAAG 46585 || ||| Sbjct 1366245 ACGAAG 1366240 >seq14 Length=1110587 Score = 100 bits (110), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||||||||||||||| ||||| || |||| ||||| |||||||||||||| Sbjct 440950 TCCTTCTGGATATTGTAGTCGGAGAGAGTCCGGCCGTCTTCGAGTTGCTTGCCGGCGAAG 440891 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||| ||||| || |||| || | || ||||||||| Sbjct 440890 ATCAGTCGCTGTTGATCGGGTGGGATGCCCTCCTTGTC 440853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238117380800