Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02]
40 sequences; 37,173,200 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq9 134 2e-26
seq5 122 1e-22
seq14 100 3e-16
>seq9
Length=1292822
Score = 134 bits (148), Expect = 2e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||| | |||| || || || || ||||||||||| || ||||| | || ||
Sbjct 436691 ACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGACCATCCTCC 436750
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||||||||| |||||||||||||| || | || | || ||||| ||| |
Sbjct 436751 AGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAGGAATGCCTTCCTTATCCTGG 436810
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| |||| | | | | |||||| |||||| || || | |||||||| |||
Sbjct 436811 ATCTTGCTCTTCACATTATCGATGGTGTCGGACGATTCAACTTCTAAGGTGATGGTCTTG 436870
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||| || || || |||||||||||
Sbjct 436871 CCGGTCAATGTCTTGACGAAGATTTGCAT 436899
Score = 104 bits (114), Expect = 3e-17
Identities = 146/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424
||||||| | | ||| | |||| || | ||| |||||| ||||| ||||||||||
Sbjct 437181 TGCCTCCACGGAGACGAAGAACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCGG 437240
Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484
|||| || || |||| |||||||| ||||||||||| || | |||||||| || | |
Sbjct 437241 ATAGGGTACGGCCGTCTTCGAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGG 437300
Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544
| | | |||||||||| ||||| |||| | | | | || || || || || |
Sbjct 437301 GAATACCCTCCTTGTCCTGAATCTTGCTCTTCACATTATCGATAGTATCACTGGACTCGA 437360
Query 46545 CATCCACCGTGATGGTTTTGCCCGT 46569
| || | |||||||| ||||| ||
Sbjct 437361 CCTCGAGAGTGATGGTCTTGCCGGT 437385
Score = 93.3 bits (102), Expect = 5e-14
Identities = 151/216 (70%), Gaps = 6/216 (3%)
Strand=Plus/Plus
Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440
|||||| |||||||| || ||||| || ||||| || || || || | || || | ||
Sbjct 436459 CAACACGAGATGCAAAGTGCTCTCTTTCTGGATGTTATAATCCGACAATGTCCGACCATC 436518
Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| | |||||||||||| || || | |||||| || || | || | | ||| |||||
Sbjct 436519 TTCCAACTGCTTGCCGGCAAAGATGAGGCGCTGTTGATCTGGGGGAATACCCTCTTTGTC 436578
Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGAT 46557
|||||| |||| | | | | || || ||| |||||| || | |||||
Sbjct 436579 TTGGATCTTGCTCTTCACATTATCGATTGTATCCGAGCT---TTCCACTTCGAGTGTGAT 436635
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||||| || |||| || || |||||||| |||||
Sbjct 436636 GGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 436671
>seq5
Length=1929936
Score = 122 bits (134), Expect = 1e-22
Identities = 141/186 (76%), Gaps = 3/186 (2%)
Strand=Plus/Minus
Query 46402 CTCCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGA 46460
|| |||| |||||||||||||| || || ||||| | || ||||| || ||||||||||
Sbjct 1366424 CTACTTTCTGGATATTGTAGTCTGACAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCGA 1366365
Query 46461 ATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG 46520
| |||| ||| |||||||| | || | || ||| ||||| |||||| |||||| ||
Sbjct 1366364 AGATCAGGCGTTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGCTCTTGA-CG 1366306
Query 46521 TCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579
| | | | |||||| ||||| || || | ||||||||| |||||||| || || ||
Sbjct 1366305 TTGTCAATTGTGTCGGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGTTAGGGTCTTG 1366246
Query 46580 ACAAAG 46585
|| |||
Sbjct 1366245 ACGAAG 1366240
>seq14
Length=1110587
Score = 100 bits (110), Expect = 3e-16
Identities = 81/98 (83%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||||||||||||||| ||||| || |||| ||||| ||||||||||||||
Sbjct 440950 TCCTTCTGGATATTGTAGTCGGAGAGAGTCCGGCCGTCTTCGAGTTGCTTGCCGGCGAAG 440891
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|||| ||||| || |||| || | || |||||||||
Sbjct 440890 ATCAGTCGCTGTTGATCGGGTGGGATGCCCTCCTTGTC 440853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238117380800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |