Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq9 223 3e-53 seq5 96.9 3e-15 >seq9 Length=1292822 Score = 223 bits (246), Expect = 3e-53 Identities = 576/863 (67%), Gaps = 25/863 (3%) Strand=Plus/Minus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || ||| |||||||| || ||||| ||||| || || || ||||| || | Sbjct 487347 CATGACACCAGCCTTTTGATAGTCACCCACGCGCTTCTCGAAGAAGTTGGTTTTGCCAGC 487288 Query 132651 CAAGGAAATGAGCGTC-ATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGA 132709 | || || | ||| || || || ||||| || | ||||| |||| || | Sbjct 487287 AAGAGAGAT-ATTGTCCATGAAGTCGAAGGGATTCGTAACATTGTAAAACTTGTTGTTGC 487229 Query 132710 TCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACAT---GGTTTCGC 132766 || | || || || | || || || || || ||||||||| ||| ||| || Sbjct 487228 CAAGAGCAACAAGTAGACGATCAGCAACAAATTCAATGTATTGCTTCATCAAGGT--CG- 487172 Query 132767 AATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCG 132825 | || | || |||| ||||| ||||| || || |||||||| ||||||||| || Sbjct 487171 AGTTCATGCCGAGCAATGCGCAC-GGCAGAGCATCAGTGAGAAACTCTTGCTCGATCACG 487113 Query 132826 ACCGCGTCGGTGACGATTTCC-CTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTT 132884 || || ||||| | ||| || ||| ||| || | | | | || | | || Sbjct 487112 ACTGCCTCGGTTATGATGTCTTCTACCGCCTGCTTTGATGGTCTGTGGTTT-AGGTGGGA 487054 Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 ||||| | ||| ||||| || ||||| |||||||| | || || || || || Sbjct 487053 GAACAAGAGGCAGGCAAAATCTGTATGCAGACCCTCGTCACGAGAGATCAGCTCATTCGA 486994 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 ||| || | || ||||| ||||| || || ||||||||||| | | ||||| ||| Sbjct 486993 GAAGGTGAGACCTGGCATCAGGCCACGCTTCTTGAGCCAAAAGACAGATGCGAAGGAGCC 486934 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTC 133064 |||||||||| ||||||||||| ||||| || || ||||| | | || || | || Sbjct 486933 AGAAAAGAAGATTCCCTCGACGGCTGCGAAGGCAACAAGGCGTTGAGCAAAAGTCGACTC 486874 Query 133065 TTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTC 133124 ||| | ||||| || || ||||| | ||| |||| | || ||| || || || || Sbjct 486873 CTTGTCCGAAATCCATCGAAGAGCCCAGTTGGCTTTTTTTCGGATGCAAGGAATGGTGTC 486814 Query 133125 GATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGTCGATGAGG 133182 ||||||| |||| | | | ||| | || | | ||| ||||| || | Sbjct 486813 AATGGCGTCGAACAG--GTATTGTCTTTGTTTTGGCTCCTTGATGTACGTGTCAATCAA- 486757 Query 133183 GTCGAA---TACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCAC 133239 | || ||||| |||||||| | ||||||||| |||||||||||| || |||||| Sbjct 486756 --CAAACTGTACATCTCCGAGTGAATGTTCTCCATCATGATTTGAAAGCCATAGAAGCAC 486699 Query 133240 CGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATG 133299 || |||||| | || ||||| | || || ||||| |||||||| ||||| ||| Sbjct 486698 CGAGCCTCGGGTATTTGGACTTCGCCTGAAAATCGTTCGACGAGATTTTCATTGACAATG 486639 Query 133300 CCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTC 133359 || || ||||| || || ||||| || ||||| || ||| | | |||| ||||| Sbjct 486638 CCATCACTGGCAGCAAAGAAGGCAAGGACGTGGGAGACGAAGTATCTTTCGTCATCGTTT 486579 Query 133360 AAGCGCTC---CCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAAC 133416 | || || |||||| | || || |||||||| || || || | ||||| || Sbjct 486578 AGACGTTCACTCCAGTCATGTTGATCTTTTGACAGGTCGACTTCTTCTGCTGTCCAGAAA 486519 Query 133417 GACGCCTCGGCTTTTTTGTACAT 133439 || || |||||||| || ||||| Sbjct 486518 GAAGCTTCGGCTTTCTTATACAT 486496 Score = 102 bits (112), Expect = 8e-17 Identities = 141/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| |||||||| |||| |||||| ||| || | | | || | | |||| Sbjct 437385 ACCGGCAAGACCATCACTCTCGAGGTCGAGTCCAGTGATACTATCGATAATG--TGAAGA 437328 Query 38327 AAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCA 38385 || || | ||||| ||||| |||||| | || || ||||| || || | ||| |||| Sbjct 437327 GCAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAGCGTCTTATCTTCGCCGGCA 437268 Query 38386 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGC 38445 ||||||| || |||| || ||||| ||||||||||||||| ||||| | || || | Sbjct 437267 AACAGCTCGAAGACGGCCGTACCCTATCCGACTACAACATCCAGAAGGAGTCAACACTTC 437208 Query 38446 ATTTGGTGCTGCGT 38459 | ||||| || ||| Sbjct 437207 ACTTGGTTCTTCGT 437194 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || ||||| ||||||||| | || || || | || Sbjct 436899 ATGCAAATCTTCGTCAAGACATTGACCGGCAAGACCATCACCTTAGAAGTTGAATCGTCC 436840 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || |||| || || || || ||||| | || | Sbjct 436839 GACACCATCGATAATG--TGAAGAGCAAGATCCAGGATAAGGAAGGCATTCCTCCAGATC 436782 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||| ||||| |||||||| || | ||||| || |||||||| Sbjct 436781 AGCAGCGCTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACACTGTCCGACTACA 436722 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| || || ||| | || || ||| | || ||| | || |||| ||| Sbjct 436721 ACATTCAGAAAGAATCTACACTACATCTTGTTCTGAGACTGCGAGGTGGC 436672 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 38249 AATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAG 38308 |||| |||| || || || || || || |||||||| | || |||||| | | |||| Sbjct 437122 AATAGTCGTCAAGACTCTGACTGGGAAGACCATCACTCTGGAGGTCGAGTCGTCTGACAC 437063 Query 38309 CGTGCA-AACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAG 38366 | | || | |||||| ||||| | ||||| ||||| |||||| | || || || Sbjct 437062 TATCGACAATG--TAAAGAGCAAAATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAA 437005 Query 38367 CGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATC 38426 || || || | ||| || ||||| || || || | || ||||| ||||||||||||| Sbjct 437004 CGACTTATCTTCGCTGGTAAACAACTCGAAGATGGCCGAACCCTATCCGACTACAACATC 436945 Query 38427 CAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || ||| | || || || | || || ||| Sbjct 436944 CAGAAAGAATCTACTCTTCACCTCGTCCTCCGT 436912 >seq5 Length=1929936 Score = 96.9 bits (106), Expect = 3e-15 Identities = 132/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| |||||||| |||| ||||| || |||||| | Sbjct 1366241 TTCGTCAAGACCCTAACGGGCAAGACCATCACGCTCGAGGTCGAATCCTCCGACACAATT 1366300 Query 38313 CA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGC 38370 | |||| | |||| || |||| ||||||||||| || || | ||||| || || | Sbjct 1366301 GACAACG--TCAAGAGCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAACGCC 1366358 Query 38371 TCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAA 38430 | || | ||| |||||||| || || || | |||||||| |||||||| ||||| | Sbjct 1366359 TGATCTTCGCCGGCAAACAACTCGAAGATGGCCGCACCCTGTCAGACTACAATATCCAGA 1366418 Query 38431 A 38431 | Sbjct 1366419 A 1366419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172549913600