Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq29 114 1e-19 seq1 104 2e-16 seq9 95.1 9e-14 >seq29 Length=320926 Score = 114 bits (126), Expect = 1e-19 Identities = 411/638 (64%), Gaps = 6/638 (1%) Strand=Plus/Plus Query 518015 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 518074 ||||| || || || || || ||||| ||||| | |||| || | |||| | || Sbjct 305840 ACAAGTCGGTTGTCGAAGTCCTCACCACCCAAGTGGGTATCACCAGCAGTAGACTTGACC 305899 Query 518075 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCA 518134 | || | || ||||| | | ||| || | ||||| || ||||| || | |||| Sbjct 305900 TCAAAGATACCCTCTTCGATTGTCAAGAGGGAGACATCGAATGTACCACCGCCAAGATCA 305959 Query 518135 AAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCA 518194 || || | || || || || || || ||||||||||| || | ||||| Sbjct 305960 AAGATCAAGACGTTGCGCTCACCCTCGGCCTTCTTGTCAAGACCATAGGCGATGGCAGCG 306019 Query 518195 GCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTA 518254 || || ||||| || ||||| | ||| || || |||||||| || || |||||||| Sbjct 306020 GCGGTAGGTTCGTTGATAATGCGCAAGACGTTGAGACCAGCGATCAGGCCGGCATCTTTG 306079 Query 518255 GTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT 518314 |||||||||| |||||| ||||| || ||||| || ||||| | ||||| | | || Sbjct 306080 GTGGCTTGTCGTTGTGAGTCGTTGAAGTATGCTGGGACAGTGACGACGGCGTTGTTGACA 306139 Query 518315 TCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 518374 ||||| || | || || | | ||| || | || | ||| ||||| || Sbjct 306140 GTACCACCAAGGTATGACTCAGCAGTCTCTCGCATCTTGGTCAAGACCATAGATGAGATC 306199 Query 518375 TGTTCTGGGGAATATTGCTTGGATTCA-TTTTGATATGATACTTCAAAATATGGTTTATT 518433 | ||||| | | |||| ||| |||| || || | | ||||| Sbjct 306200 TCCTCTGGTGTGAAGAACTTGCTCTCACCCTTGA-ATTCGACCTTGATGACCGGTTTGCC 306258 Query 518434 ACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGG--TCA 518491 || | || || | || || ||| |||||||| | ||| |||| | || Sbjct 306259 GCCCTTGTCAACGACCTCGAAGGGGAAGTGCTTCATATCGGCCTGA--ACTTCAGCATCG 306316 Query 518492 TTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCA 518551 || | | ||| || | || ||||| || || | || |||| ||||| || || Sbjct 306317 GCGAATTTGCGACCGATCAGACGCTTTGCGTCGAAGACCGTGTTGGAGGGATTCATGGCG 306376 Query 518552 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGAT 518611 | |||| ||||||| || ||||||||| | || || ||||| || | ||| | ||| Sbjct 306377 ACCTGATTCTTGGCTGAGTCACCAATCAGACGCTCAGTATCTGTGAAAGCGACAAAGGAT 306436 Query 518612 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 518649 || ||||| || || ||||| ||||| ||||| ||||| Sbjct 306437 GGTGTTGTTCGGTTGCCTTGGTCATTGGCAATGATTTC 306474 >seq1 Length=3800214 Score = 104 bits (114), Expect = 2e-16 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 518172 CAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGAC 518231 |||||||||| || | ||| |||||||||||||| || || || | ||| || || |||| Sbjct 745256 CAAGACCATATGCGATAGCGGCAGCAGTTGGTTCGTTGATGATGCGCAACACGTTGAGAC 745197 Query 518232 CAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAA 518291 |||| || || |||||||| ||||| |||||||| ||||| ||||||||||| | Sbjct 745196 CAGCGATAGCACCAGCATCTTTGGTGGCCTGTCTTTGATTGTCGTTGAAATATGCAGGGA 745137 Query 518292 CAGTAATAACGGCATCAGTTA-CTTCTTTACCAA 518324 | || | || || | || | ||| ||| |||| Sbjct 745136 CCGTGACGACAGCCTTAGCGACCTTTTTTCCCAA 745103 >seq9 Length=1292822 Score = 95.1 bits (104), Expect = 9e-14 Identities = 121/166 (73%), Gaps = 3/166 (2%) Strand=Plus/Minus Query 518547 TTGCAGC---TTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAA 518603 ||||||| ||| | |||||||||||||| | | | ||||| || ||||| | | Sbjct 952931 TTGCAGCATATTGGTTCTTGGCTGCATCTCCCACTAAACGTTCTTCATCCGTAAAGGCCA 952872 Query 518604 CATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTT 518663 | || || || ||| | ||||| ||||| || || |||| ||||| ||||| || || | Sbjct 952871 CGTACGAGGGTGTTATTCGATTCCCTTGGTCGTTGACAATGATTTCGACTTTTCCGTTGT 952812 Query 518664 GCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAAT 518709 || ||||| |||||| | | |||||||| | |||||| ||||| Sbjct 952811 GCATCACACCAACACAAGAATAGGTTGTTCCCAGATCAATCCCAAT 952766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780820415068240