Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1 145 9e-30 >seq1 Length=3800214 Score = 145 bits (160), Expect = 9e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 153216 GGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTGAGAATCCTAGT 153275 || |||||||| ||| || ||| ||||| |||||||||||||||||| ||| Sbjct 1885756 GGTTACTATGGGACCTTTGTACCGGAGGTCATCAAGCGAAACGTTCTTGAGAGCCCTGCA 1885815 Query 153276 TGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTA 153335 ||||||||| |||||| || ||||||||||| | |||||| |||||||| || | Sbjct 1885816 TGGTACACAAGTTACACACCATATCAAGCTGAAGTCAGCCAGGGACGATTGGAATCTCTG 1885875 Query 153336 TTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTA 153395 | |||| |||||| | |||| || || |||| ||| || || |||||||| || | Sbjct 1885876 CTGAATTTCCAAACCATGGTCACTGACCTGACAGCATTGCCGATTGCAAACGCGTCAGTG 1885935 Query 153396 TTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 | |||||||| ||||| ||||||||||| ||| Sbjct 1885936 CTGGATGAAGCTACTGCGGCAGCAGAAGCCATG 1885968 Score = 116 bits (128), Expect = 4e-21 Identities = 257/381 (67%), Gaps = 7/381 (2%) Strand=Plus/Plus Query 154723 TGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAAG 154782 |||| || | || || |||||||| || ||||| ||||||| ||||||||| ||||||| Sbjct 1887386 TGATCCCGGTCTCTGCTCATGGAACAAACCCTGCCAGTGCTGCCATGGCAGGAATGAAAG 1887445 Query 154783 TTGTAGGTGTCAAGTGTGATGATGA---TGGTAACATAGACATCAAAGATCTAGAGAAGA 154839 | || | || ||||||| | ||| || | ||||| | ||| | || |||| Sbjct 1887446 TGGTCCCCTTGAAATGTGATGCCAAAACTGGCAATCTGGACATTGAGGATTT-GA-AAGA 1887503 Query 154840 AAGCAATCATGAATACATT--TGAACTGTCATGTATTATGATTACATACCCATCTACACA 154897 | | | || ||| |||||| | ||| ||||| || || |||||||| Sbjct 1887504 CAAGTGTGAGCAACACAAGGATGAACTCGCTGCTATCATGATCACCTATCCATCTACCTT 1887563 Query 154898 TGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGGTGGTCA 154957 ||| || |||||| | | || | | | | || ||||||||||| |||| ||||| Sbjct 1887564 TGGAGTGTTTGAACCGGAAATCAAAAACGTCTGCTCTATCGTTCATGAGCATGGAGGTCA 1887623 Query 154958 GGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATGTGAGTA 155017 || ||| | || || || || | ||||| || | || || || || | || Sbjct 1887624 AGTCTATATGGACGGCGCGAACTTGAATGCGCAAATGGGCCTCTGCAATCCGGGAGACAT 1887683 Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||||||||||| || || || || | || || || || |||||||| || || || || Sbjct 1887684 AGGTGCAGATGTGTGCCACCTTAATCTCCACAAGACCTTTTGTATTCCTCACGGTGGGGG 1887743 Query 155078 AGGTCCTGGCGTAGGTCCTAT 155098 ||| ||||| ||||| ||||| Sbjct 1887744 AGGGCCTGGGGTAGGACCTAT 1887764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579212510393600