Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1 141 1e-28 >seq1 Length=3800214 Score = 141 bits (156), Expect = 1e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 157891 GGATACTATGGAACCATCACACCCCCAGTCATACAGCGAAACGTTCTTGAGAATCCTAGT 157950 || |||||||| ||| | ||| ||||| |||||||||||||||||| ||| Sbjct 1885756 GGTTACTATGGGACCTTTGTACCGGAGGTCATCAAGCGAAACGTTCTTGAGAGCCCTGCA 1885815 Query 157951 TGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTA 158010 ||||||||| |||||| || ||||||||||| | |||||| |||||||| || | Sbjct 1885816 TGGTACACAAGTTACACACCATATCAAGCTGAAGTCAGCCAGGGACGATTGGAATCTCTG 1885875 Query 158011 TTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCAAACGCATCTCTA 158070 | |||| |||||| | |||| || || |||| | | ||||| |||||||| || | Sbjct 1885876 CTGAATTTCCAAACCATGGTCACTGACCTGACAGCATTGCCGATTGCAAACGCGTCAGTG 1885935 Query 158071 TTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 | |||||||| ||||| ||||||||||| ||| Sbjct 1885936 CTGGATGAAGCTACTGCGGCAGCAGAAGCCATG 1885968 Score = 120 bits (132), Expect = 4e-22 Identities = 259/383 (68%), Gaps = 7/383 (2%) Strand=Plus/Plus Query 159398 TGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAG 159457 |||| || | || || |||||||| || ||||| || | |||||||| ||||||| Sbjct 1887386 TGATCCCGGTCTCTGCTCATGGAACAAACCCTGCCAGTGCTGCCATGGCAGGAATGAAAG 1887445 Query 159458 TTGTAGGTGTCAAGTGTGATGATGA---TGGCAACATAGACATCAAAGATCTAGAGAAGA 159514 | || | || ||||||| | |||||| | ||||| | ||| | || |||| Sbjct 1887446 TGGTCCCCTTGAAATGTGATGCCAAAACTGGCAATCTGGACATTGAGGATTT-GA-AAGA 1887503 Query 159515 AAGCAATCATGAATACATT--TGAACTGTCATGTATTATGATTACATATCCATCTACACA 159572 | | | || ||| |||||| | ||| ||||| || ||||||||||| Sbjct 1887504 CAAGTGTGAGCAACACAAGGATGAACTCGCTGCTATCATGATCACCTATCCATCTACCTT 1887563 Query 159573 TGGTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCA 159632 ||| || |||||| | | |||| | | | || || ||||||||| |||| ||||| Sbjct 1887564 TGGAGTGTTTGAACCGGAAATCAAAAACGTCTGCTCTATCGTTCATGAGCATGGAGGTCA 1887623 Query 159633 GGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTA 159692 || ||| | || || || || | ||||| || | || || || || | ||| Sbjct 1887624 AGTCTATATGGACGGCGCGAACTTGAATGCGCAAATGGGCCTCTGCAATCCGGGAGACAT 1887683 Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||||||||||| || || || || | || ||||| || |||||||| || || || || Sbjct 1887684 AGGTGCAGATGTGTGCCACCTTAATCTCCACAAGACCTTTTGTATTCCTCACGGTGGGGG 1887743 Query 159753 AGGTCCTGGCGTAGGTCCTATTG 159775 ||| ||||| ||||| ||||||| Sbjct 1887744 AGGGCCTGGGGTAGGACCTATTG 1887766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588050905974400