Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq9 150 4e-31 seq5 123 6e-23 >seq9 Length=1292822 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 ||||||| |||||| || || || || ||||| ||||| ||||| |||| || || | Sbjct 436682 AGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGA 436741 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 ||||| || |||||||| || |||||||| | || || || ||||||||||||||||| Sbjct 436742 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAGGAATGCCTTCC 436801 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || |||||||| || ||| ||||| | ||| Sbjct 436802 TTATCCTGGATCTTGCTCTTCACATTATCGATGGTGTCGGACGATTCAACTTCTAAGGTG 436861 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || ||||| || || ||||| | |||||| Sbjct 436862 ATGGTCTTGCCGGTCAATGTCTTGACGAAGATTTGCAT 436899 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||||||||| || ||||| || || ||||| |||| || |||| ||||||||| Sbjct 436919 ACGAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGATAGGGTTCGGCCATCTTCG 436978 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || ||||| ||||||||||||||||| || || || ||||| || || ||||| ||| Sbjct 436979 AGTTGTTTACCAGCGAAGATAAGTCGTTGCTGATCCGGGGGAATACCCTCCTTGTCCTGA 437038 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| ||| || || || || ||||| || || || || || || | ||||| Sbjct 437039 ATTTTGCTCTTTACATTGTCGATAGTGTCAGACGACTCGACCTCCAGAGTGATGGTCTTC 437098 Query 195112 CCTGTCAAAGTTTTTACGA 195130 || |||| ||| || |||| Sbjct 437099 CCAGTCAGAGTCTTGACGA 437117 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| || || || | |||| |||||| || || || ||||| | | || | Sbjct 436454 AGTCTCAACACGAGATGCAAAGTGCTCTCTTTCTGGATGTTATAATCCGACAATGTCCGA 436513 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| | |||||| || || ||||| || || ||||| ||||| ||||| || ||| Sbjct 436514 CCATCTTCCAACTGCTTGCCGGCAAAGATGAGGCGCTGTTGATCTGGGGGAATACCCTCT 436573 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||| || || ||| || || || || || ||||| ||||||||||| || || Sbjct 436574 TTGTCTTGGATCTTGCTCTTCACATTATCGATTGTATCCGAGCTTTCCACTTCGAGTGTG 436633 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || |||||||| || || || || | ||||| Sbjct 436634 ATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 436671 Score = 95.1 bits (104), Expect = 3e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || ||||| || || || ||||| |||| || || | || ||||| Sbjct 437200 AACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCGGATAGGGTACGGCCGTCTTC 437259 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||| || || ||||||||||| || || || || || ||||| || || ||||| || Sbjct 437260 GAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTG 437319 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 ||| || ||| || || || || || || Sbjct 437320 AATCTTGCTCTTCACATTATCGATAGTATC 437349 >seq5 Length=1929936 Score = 123 bits (136), Expect = 6e-23 Identities = 136/181 (75%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||| || |||||||| || | || || | ||||||||||| || || || ||||||| Sbjct 1366421 CTTTCTGGATATTGTAGTCTGACAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAGA 1366362 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | || ||||| |||||||| || ||||| ||||||||||| || || ||||||||| | Sbjct 1366361 TCAGGCGTTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGCTCTTGACGTTGT 1366302 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 |||| ||||| || ||| || || || || | ||||| || || | || || |||| Sbjct 1366301 CAATTGTGTCGGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGTTAGGGTCTTGACGA 1366242 Query 195131 A 195131 | Sbjct 1366241 A 1366241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481031390680