Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02]
40 sequences; 37,173,200 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq9 150 4e-31
seq5 123 6e-23
>seq9
Length=1292822
Score = 150 bits (166), Expect = 4e-31
Identities = 164/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
||||||| |||||| || || || || ||||| ||||| ||||| |||| || || |
Sbjct 436682 AGTCTCAGAACAAGATGTAGTGTAGATTCTTTCTGAATGTTGTAGTCGGACAGTGTGCGA 436741
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
||||| || |||||||| || |||||||| | || || || |||||||||||||||||
Sbjct 436742 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGAGGAATGCCTTCC 436801
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| || || || || ||| || || || |||||||| || ||| ||||| | |||
Sbjct 436802 TTATCCTGGATCTTGCTCTTCACATTATCGATGGTGTCGGACGATTCAACTTCTAAGGTG 436861
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||||| || ||||| || || ||||| | ||||||
Sbjct 436862 ATGGTCTTGCCGGTCAATGTCTTGACGAAGATTTGCAT 436899
Score = 143 bits (158), Expect = 6e-29
Identities = 151/199 (76%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||||||||| || ||||| || || ||||| |||| || |||| |||||||||
Sbjct 436919 ACGAGGTGAAGAGTAGATTCTTTCTGGATGTTGTAGTCGGATAGGGTTCGGCCATCTTCG 436978
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|| || ||||| ||||||||||||||||| || || || ||||| || || ||||| |||
Sbjct 436979 AGTTGTTTACCAGCGAAGATAAGTCGTTGCTGATCCGGGGGAATACCCTCCTTGTCCTGA 437038
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
||||| ||| || || || || ||||| || || || || || || | |||||
Sbjct 437039 ATTTTGCTCTTTACATTGTCGATAGTGTCAGACGACTCGACCTCCAGAGTGATGGTCTTC 437098
Query 195112 CCTGTCAAAGTTTTTACGA 195130
|| |||| ||| || ||||
Sbjct 437099 CCAGTCAGAGTCTTGACGA 437117
Score = 136 bits (150), Expect = 9e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| || || || | |||| |||||| || || || ||||| | | || |
Sbjct 436454 AGTCTCAACACGAGATGCAAAGTGCTCTCTTTCTGGATGTTATAATCCGACAATGTCCGA 436513
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| | |||||| || || ||||| || || ||||| ||||| ||||| || |||
Sbjct 436514 CCATCTTCCAACTGCTTGCCGGCAAAGATGAGGCGCTGTTGATCTGGGGGAATACCCTCT 436573
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|||||||| || || ||| || || || || || ||||| ||||||||||| || ||
Sbjct 436574 TTGTCTTGGATCTTGCTCTTCACATTATCGATTGTATCCGAGCTTTCCACTTCGAGTGTG 436633
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || || |||||||| || || || || | |||||
Sbjct 436634 ATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 436671
Score = 95.1 bits (104), Expect = 3e-14
Identities = 111/150 (74%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990
||| | |||||| || ||||| || || || ||||| |||| || || | || |||||
Sbjct 437200 AACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCGGATAGGGTACGGCCGTCTTC 437259
Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050
|||||| || || ||||||||||| || || || || || ||||| || || ||||| ||
Sbjct 437260 GAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTG 437319
Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTC 195080
||| || ||| || || || || || ||
Sbjct 437320 AATCTTGCTCTTCACATTATCGATAGTATC 437349
>seq5
Length=1929936
Score = 123 bits (136), Expect = 6e-23
Identities = 136/181 (75%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010
|||| || |||||||| || | || || | ||||||||||| || || || |||||||
Sbjct 1366421 CTTTCTGGATATTGTAGTCTGACAGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAGA 1366362
Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070
| || ||||| |||||||| || ||||| ||||||||||| || || ||||||||| |
Sbjct 1366361 TCAGGCGTTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGCTCTTGACGTTGT 1366302
Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130
|||| ||||| || ||| || || || || | ||||| || || | || || ||||
Sbjct 1366301 CAATTGTGTCGGAGGATTCGACCTCGAGCGTGATGGTCTTGCCCGTTAGGGTCTTGACGA 1366242
Query 195131 A 195131
|
Sbjct 1366241 A 1366241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109481031390680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |