Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 3e-14 >seq9 Length=1292822 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 34751 ATTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC 34810 ||| || || | || ||||| || | || | ||||| |||||||| |||||||| || Sbjct 436441 ATTGCCACCACGCAGTCTCAACACGAGATGCAAAGTGCTCTCTTTCTGGATGTTATAATC 436500 Query 34811 CGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTG 34870 ||| | | || |||| |||| ||| || |||||||| || || || || || ||| | Sbjct 436501 CGACAATGTCCGACCATCTTCCAACTGCTTGCCGGCAAAGATGAGGCGCTGTTGATCTGG 436560 Query 34871 CGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCA--CCGGCC 34928 || | ||||| ||||| ||||| || || || |||||||| ||| | Sbjct 436561 GGGAATACCCTCTTTGTCTTGGATCTTGCTCTTCAC--AT--TATCGATTGTATCCGAGC 436616 Query 34929 T--CAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | | || |||| || |||||||| || || | ||||| |||||||||||||| Sbjct 436617 TTTCCACTTCGAGTGTGATGGTTTTCCCTGTCAAGGTCTTGACAAAGATCTGCAT 436671 Score = 84.2 bits (92), Expect = 1e-11 Identities = 134/190 (71%), Gaps = 8/190 (4%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| ||| || ||||| ||||| ||||| || ||| | || | || || Sbjct 437200 AACCAAGTGAAGTGTTGACTCCTTCTGGATGTTGTAGTCGGATAGGGTACGGCCGTCTTC 437259 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||||| ||||| || || || || ||||| || | || | ||||||||||| Sbjct 437260 GAGCTGTTTGCCGGCGAAGATAAGACGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTG 437319 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 |||||| || || || ||||||| |||| || ||| || |||| || |||| Sbjct 437320 AATCTTGCTCTTCAC--AT--TATCGATAGTATCACTGGACTCGACCTCGAGAGTGATGG 437375 Query 34948 TTTTTCCCGT 34957 | || || || Sbjct 437376 TCTTGCCGGT 437385 Score = 82.4 bits (90), Expect = 5e-11 Identities = 132/185 (71%), Gaps = 10/185 (5%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || ||| |||| |||| || || ||||| || || || Sbjct 436936 TTCTTTCTGGATGTTGTAGTCGGATAGGGTTCGGCCATCTTCGAGTTGTTTACCAGCGAA 436995 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT-CTGTTTGACGG 34908 || ||||||||||| || | || | ||||||||||| ||| || || ||| || Sbjct 436996 GATAAGTCGTTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAATTTTGCTCTTT-AC-- 437052 Query 34909 ATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTC 34964 || | ||||| ||| | ||| || || | || ||||| || || || |||||| Sbjct 437053 AT--TGTCGATAGTGTCAGACGACTCGACCTCCAGAGTGATGGTCTTCCCAGTCAGAGTC 437110 Query 34965 TTCAC 34969 || || Sbjct 437111 TTGAC 437115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633441741120