Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq9 187 3e-42 >seq9 Length=1292822 Score = 187 bits (206), Expect = 3e-42 Identities = 552/847 (65%), Gaps = 7/847 (1%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||||||| || | || | || || ||||| || ||||| || | | || ||| Sbjct 487334 TTTTGATAGTCACCCACGCGCTTCTCGAAGAAGTTGGTTTTGCCAGCAAGAGAGATATTG 487275 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| || || || ||||| | ||||| || | || ||| || | | | ||| Sbjct 487274 TCCATGAAGTCGAAGGGATTCGTAACATTGTAAAACTTGTTGTTGCCAAGAGCAACAAGT 487215 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 || | ||| || ||||||| ||| ||| ||||||| | ||||| || | ||| Sbjct 487214 AGACGATCAGCAACAAATTCAATGTATTGCTTCATCAAGGTCGAGTTCATGCCGAGCAAT 487155 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 || || ||||| || ||||| ||||| || || |||||||| | ||| || Sbjct 487154 GCGCACGGCAGAGCATCAGTGAGAAACTCTTGCTCGATCACGACTGCCTCGGTTATGATG 487095 Query 18910 GATACAACT--CTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | || || || || || || || || |||| | || |||| Sbjct 487094 TCTTCTACCGCCTGCTTTGAT--GGTCTGTGGTTTAGGTGGGAGAACAAGAGGCAGGCAA 487037 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 |||| ||| || |||||||| | | |||| ||||| || || || | ||| |||| Sbjct 487036 AATCTGTATGCAGACCCTCGTCACGAGAGATCAGCTCATTCGAGAAGGTGAGACCTGGCA 486977 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 |||| || | || || | ||| || | ||| || || || ||||||||||| || || | Sbjct 486976 TCAGGCCACGCTTCTTGAGCCAAAAGACAGATGCGAAGGAGCCAGAAAAGAAGATTCCCT 486917 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | || ||||| || ||||| || | || || || | | || || | ||||||| Sbjct 486916 CGACGGCTGCGAAGGCAACAAGGCGTTGAGCAAAAGTCGACTCCTTGTCCGAAATCCATC 486857 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 || ||||| | || || ||| | || || || || || || | | || || | Sbjct 486856 GAAGAGCCCAGTTGGCTTTTTTTCGGATGCAAGGAATGGTGTCAATGGCGTCGAACAGGT 486797 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAAT 19267 | | | | || || || | || | || ||||| ||||||||||| || || | Sbjct 486796 ATTGTCTTTGTTTTGGCTCCTTGATGTACGTGTCAATCAACAAACTGTACATCTCCGAGT 486737 Query 19268 GAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTT 19327 |||| || || || || ||||| || || || || | || || | ||| || |||| Sbjct 486736 GAATGTTCTCCATCATGATTTGAAAGCCATAGAAGCACCGAGCCTCGGGTATTTGGACTT 486677 Query 19328 CACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATG 19387 | | |||||| |||||| | ||||||||| || || |||||||| || ||||| || | Sbjct 486676 CGCCTGAAAATCGTTCGACGAGATTTTCATTGACAATGCCATCACTGGCAGCAAAGAAGG 486617 Query 19388 CTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTA-ATGT--ATTCCAATCATTAA 19444 | | || || | || | | |||| || | ||| | || | |||| |||| Sbjct 486616 CAAGGACGTGGGAGACGAAGTATCTTTCGTCATCGTTTAGACGTTCACTCCAGTCATGTT 486557 Query 19445 TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACA 19504 |||||| || | || |||||||| ||||||| |||||||| || ||||| ||||||| Sbjct 486556 GATCTTTTGACAGGTCGACTTCTTCTGCTGTCCAGAAAGAAGCTTCGGCTTTCTTATACA 486497 Query 19505 TGTTCCA 19511 | | ||| Sbjct 486496 TCTGCCA 486490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108518945600