Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocarpon_20pusillum_20[genbank_20GCA_5F000611755.1_202014-04-02] 40 sequences; 37,173,200 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq29 125 6e-23 seq9 96.9 3e-14 >seq29 Length=320926 Score = 125 bits (138), Expect = 6e-23 Identities = 323/487 (66%), Gaps = 10/487 (2%) Strand=Plus/Minus Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 ||||| ||||||||||| ||||| ||| |||| || ||||| | ||| ||||||| || Sbjct 306474 GAAATCATTGCCAATGACCAAGGCAACCGAACAACACCATCCTTTGTCGCTTTCACAGAT 306415 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACT 550174 ||||| | | | ||||||| |||| || |||| | | | ||||| |||| || Sbjct 306414 ACTGAGCGTCTGATTGGTGACTCAGCCAAGAATCAGGTCGCCATGAATCCCTCCAACACG 306355 Query 550175 ATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGAT 550234 | || || || || ||| | || || | | || ||| | |||||||| ||| Sbjct 306354 GTCTTCGACGCAAAGCGTCTGATCGGTCGCAAATTCGCCGATGCTGAAGTTCAGGCCGAT 306295 Query 550235 ATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACT 550294 |||||||| | || ||| | | ||| | || ||||| || ||| | Sbjct 306294 ATGAAGCACTTCCCCTTCGAGGTCGTTGACAAGGGCGGCAAACCGGTCATC-AAGGTCGA 306236 Query 550295 CATGAAGGATCTGTTAAACAATTTT----CACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | |||| | | | ||| || ||||||| | || ||||||||||| || | Sbjct 306235 ATTCAAGGGTGAG---AGCAAGTTCTTCACACCAGAGGAGATCTCATCTATGGTCTTGAC 306179 Query 550351 GAAAATGAAACAAACAGCC-AGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAA 550409 || ||| | | || || ||| | | ||||| || | | || || | | Sbjct 306178 CAAGATGCGAGAGACTGCTGAGT-CATACCTTGGTGGTACTGTCAACAACGCCGTCGTCA 306120 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 |||| |||||||| || || ||||||||||| ||||| || |||||||| || | || | Sbjct 306119 CTGTCCCAGCATACTTCAACGACTCACAACGACAAGCCACCAAAGATGCCGGCCTGATCG 306060 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGAC 550529 |||| || || || | || |||||||| |||||||| || ||||| | || ||||| | Sbjct 306059 CTGGTCTCAACGTCTTGCGCATTATCAACGAACCTACCGCCGCTGCCATCGCCTATGGTC 306000 Query 550530 TTGATAA 550536 |||| || Sbjct 305999 TTGACAA 305993 >seq9 Length=1292822 Score = 96.9 bits (106), Expect = 3e-14 Identities = 117/158 (74%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 550380 TTGGTCAAGA-AGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAA 550438 |||| ||||| ||| || ||||||| | || || ||||||||||| |||||| || Sbjct 953203 TTGGGCAAGACAGTCACCCATGCAGTCGTCACCGTCCCAGCATATTTCAATGACAACCAG 953262 Query 550439 CGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAAT 550498 || ||||| || || |||||||| || || ||| | |||||||| || | |||| Sbjct 953263 CGACAAGCCACCAAGGATGCTGGTACAATCGCCGGATTAAATGTTCTACGAGTGGTCAAC 953322 Query 550499 GAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||||||||| || || ||||| || || || || || Sbjct 953323 GAACCTACTGCGGCAGCTCTTGCCTACGGCCTAGACAA 953360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029293884619600